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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 579 fasta sequence
[CACTTCGTTTACNCGCAGAAAACAATGGTCTCCATGGGGAAGTTTCTCCTGGGGGTATTCGGGCT-TGCTGTGGTC-GTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGTTCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTCATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGACAGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGGGCCCCGGTGGGGAACAAAATGGCATTTGTGTGGAATAACGATGTGTATGTTAAGAGCAGTCCTACAGCTCCCCCACAACGGGTCACCGACACAGGCATG]
[+] EMBL FR0059715 [CACTTCGTTTACNCGCAGAAAACAATGGTCTCCATGGGGAAGTTTCTCCTGGNGTTATTCGCCCTCTCCTGTGGTCAGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGATCAGCGAACATATTTTAGGCTGCAGGGCGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGGTCTGTCTTTTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTG TCGCAGATATGTGGCA ]
[+] EMBL CA590069 [ CCTGGGGGTATTCGGGCT TGCTGTGGTC GTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACTTTCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGTTCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTCATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGACAGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGGGCCCCGGTGGGGAACAAAATGGCATTTGTGTGGAATAACGATGTGTATGTTAAGAGCAGTCCTACAGCTCCCCCACAACGGGTCACCGACACAGGCATG]
[+] EMBL CA591037 [ CCTGGGGGTATTCGGGCT TGCTGTGGTC GTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGTTCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTCATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGACAGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGGGCC ]
[+] EMBL CA591341 [ CCTGGGGGTATTCGGGCT TGCTGTGGTC GTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGTTCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTTCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTCATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGACAGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGGGCC ]
consensusID : consensus_2277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence
[GCGCAGAAAACAATGGCTCGTTGCGAAGGCTCTGGGGATCCCCCTCGCTGTGGTCGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGAACATATTTTAGGCTGCAGGACGTCATTAACGCCTTCCTGAAGCCGACGTTCTACAATCTGAAGTG]
[+] EMBL FR0059219 [GCGCAGAAAACAATGGCTCGTTGCGAAGGCTCTGGGGATCCCCCTCGCTGTGGTCGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGAACATATTTTAGGCTGCAGGACGTCATTAACGCCTTCCTGAAGCCGACGTTCTACAATCTGAAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2277#0 CACTTCGTTTACNCGCAGAAAACAATGGTCTCCATGGGGAAGTTTCTCCTGGGGGTATTC 60
consensus_2277#1 ------------GCGCAGAAAACAATGG-CTCGTTGCGAAGGCT----CTGGGGATCCCC 43
*************** *** ** * * * * ****** * *
consensus_2277#0 GGGCTTGCTGTGGTCGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGAC 120
consensus_2277#1 ---CTCGCTGTGGTCGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGAC 100
** ******************************************************
consensus_2277#0 AAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAG 180
consensus_2277#1 AAGAGCGTGGACAGCGGAACATATTTTAGGCTGCAGGACGTCATTAACGCCTTCCTGAAG 160
***************** ************************ * ******* *******
consensus_2277#0 CCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGT 240
consensus_2277#1 CCGACGTTCTACAATCTGAAGTG------------------------------------- 183
******* ***** ********
consensus_2277#0 TCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAG 300
consensus_2277#1 ------------------------------------------------------------
consensus_2277#0 TTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTC 360
consensus_2277#1 ------------------------------------------------------------
consensus_2277#0 ATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGAC 420
consensus_2277#1 ------------------------------------------------------------
consensus_2277#0 AGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGG 480
consensus_2277#1 ------------------------------------------------------------
consensus_2277#0 GCCCCGGTGGGGAACAAAATGGCATTTGTGTGGAATAACGATGTGTATGTTAAGAGCAGT 540
consensus_2277#1 ------------------------------------------------------------
consensus_2277#0 CCTACAGCTCCCCCACAACGGGTCACCGACACAGGCATG 579
consensus_2277#1 ---------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |