These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 579 fasta sequence [CACTTCGTTTACNCGCAGAAAACAATGGTCTCCATGGGGAAGTTTCTCCTGGGGGTATTCGGGCT-TGCTGTGGTC-GTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGTTCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTCATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGACAGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGGGCCCCGGTGGGGAACAAAATGGCATTTGTGTGGAATAACGATGTGTATGTTAAGAGCAGTCCTACAGCTCCCCCACAACGGGTCACCGACACAGGCATG] [+] EMBL FR0059715 [CACTTCGTTTACNCGCAGAAAACAATGGTCTCCATGGGGAAGTTTCTCCTGGNGTTATTCGCCCTCTCCTGTGGTCAGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGATCAGCGAACATATTTTAGGCTGCAGGGCGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGGTCTGTCTTTTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTG TCGCAGATATGTGGCA ] [+] EMBL CA590069 [ CCTGGGGGTATTCGGGCT TGCTGTGGTC GTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACTTTCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGTTCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTCATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGACAGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGGGCCCCGGTGGGGAACAAAATGGCATTTGTGTGGAATAACGATGTGTATGTTAAGAGCAGTCCTACAGCTCCCCCACAACGGGTCACCGACACAGGCATG] [+] EMBL CA591037 [ CCTGGGGGTATTCGGGCT TGCTGTGGTC GTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGTTCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTCATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGACAGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGGGCC ] [+] EMBL CA591341 [ CCTGGGGGTATTCGGGCT TGCTGTGGTC GTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAGCCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGTTCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTTCTGAGCAAAGACAAGTTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTCATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGACAGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGGGCC ] consensusID : consensus_2277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [GCGCAGAAAACAATGGCTCGTTGCGAAGGCTCTGGGGATCCCCCTCGCTGTGGTCGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGAACATATTTTAGGCTGCAGGACGTCATTAACGCCTTCCTGAAGCCGACGTTCTACAATCTGAAGTG] [+] EMBL FR0059219 [GCGCAGAAAACAATGGCTCGTTGCGAAGGCTCTGGGGATCCCCCTCGCTGTGGTCGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGACAAGAGCGTGGACAGCGGAACATATTTTAGGCTGCAGGACGTCATTAACGCCTTCCTGAAGCCGACGTTCTACAATCTGAAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2277#0 CACTTCGTTTACNCGCAGAAAACAATGGTCTCCATGGGGAAGTTTCTCCTGGGGGTATTC 60 consensus_2277#1 ------------GCGCAGAAAACAATGG-CTCGTTGCGAAGGCT----CTGGGGATCCCC 43 *************** *** ** * * * * ****** * * consensus_2277#0 GGGCTTGCTGTGGTCGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGAC 120 consensus_2277#1 ---CTCGCTGTGGTCGTTGTGCTGATAACGGTACCTACGGTGATATTTTTGAAAGAGGAC 100 ** ****************************************************** consensus_2277#0 AAGAGCGTGGACAGCGGGACATATTTTAGGCTGCAGGACGTCTTCAACGCCTCCCTGAAG 180 consensus_2277#1 AAGAGCGTGGACAGCGGAACATATTTTAGGCTGCAGGACGTCATTAACGCCTTCCTGAAG 160 ***************** ************************ * ******* ******* consensus_2277#0 CCGACGTCCTACAGCCTGAAGTGGATATCAGATTTCGAGTATCTGAGGAAATCCCAGGGT 240 consensus_2277#1 CCGACGTTCTACAATCTGAAGTG------------------------------------- 183 ******* ***** ******** consensus_2277#0 TCTGTCTTCTTGCACAATGTTCTTGCCAAGAATTCCACAGAGTTCCTGAGCAAAGACAAG 300 consensus_2277#1 ------------------------------------------------------------ consensus_2277#0 TTTGGAGAAAAAGAGGCCGATGACTACCAGCTGTCTGCTGATCGCAGATATGTGGCATTC 360 consensus_2277#1 ------------------------------------------------------------ consensus_2277#0 ATGAGCAACTATTCCAAGCTGTGGAGGCATTCTTTCACGGCTACATACTCACTTTACGAC 420 consensus_2277#1 ------------------------------------------------------------ consensus_2277#0 AGAGAATCCAACAAATTCCTCATGCCAGACATTCCTGATGAAGTCCAGTACTTTGCTTGG 480 consensus_2277#1 ------------------------------------------------------------ consensus_2277#0 GCCCCGGTGGGGAACAAAATGGCATTTGTGTGGAATAACGATGTGTATGTTAAGAGCAGT 540 consensus_2277#1 ------------------------------------------------------------ consensus_2277#0 CCTACAGCTCCCCCACAACGGGTCACCGACACAGGCATG 579 consensus_2277#1 --------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |