cluster # 23

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Takifugu rubripes
cluster # 23 cluster # 23 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_23#0 length = 646 sequences # 1

consensus_23#1 length = 520 sequences # 1

consensusID : consensus_23#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence

                              [AGAGCCGCAGAGAGGCTGTTTGTGTGTGAACCGACGCGTCTCCGAGCCGAATCTCACCGCTGCAAACACCAGAAACCGAACCGAGCCCGCCGACAGTGCCTGCCGCTGAAAACCAGCCATCATGACGGACGCCGACAAGTTCCTGTACGGGGACCGCAGTGGGGTCAACAACCCTCTGGCCCAGGCGGATTGGGCCTCCAAGAAGCTGGTGTGGATCCCTTCGGAGAAGCTGGGCTTCGAGCCCGGCTCCGTGAAGGAGGAGCTCGGGGACGAGTGCATGGTCGAGCTGACGGATTCTGGCAGAAAGGTGAAGGTGAACAAGGACGACATTCAGAAGATGAACCCGCCCAAGTTCAGCAAGGTGGAGGACATGGCGGAGCTCACCTGCCTGAACGAGGCCTCCGTGCTGCATAACCTGAAGGAGCGGTACTACTCCGGACTCATCTACACCTACTCCGGTCTCTTCTGCGTGGTGGTGAATCCCTACAAGCACCTTCCCATCTACAGCGAGGACATCGTCAACATGTACAAGGGCAAGAAGAGGCACGAGATGCCCCCACACATCTACGCCATCACGGACACGGCCTACAGGAGCATGATGCAGGATCGCGAGGACCAGTCCATCCTCTGCACCGGTGAATCGGGG]

[+] EMBL BU808024             [AGAGCCGCAGAGAGGCTGTTTGTGTGTGAACCGACGCGTCTCCGAGCCGAATCTCACCGCTGCAAACACCAGAAACCGAACCGAGCCCGCCGACAGTGCCTGCCGCTGAAAACCAGCCATCATGACGGACGCCGACAAGTTCCTGTACGGGGACCGCAGTGGGGTCAACAACCCTCTGGCCCAGGCGGATTGGGCCTCCAAGAAGCTGGTGTGGATCCCTTCGGAGAAGCTGGGCTTCGAGCCCGGCTCCGTGAAGGAGGAGCTCGGGGACGAGTGCATGGTCGAGCTGACGGATTCTGGCAGAAAGGTGAAGGTGAACAAGGACGACATTCAGAAGATGAACCCGCCCAAGTTCAGCAAGGTGGAGGACATGGCGGAGCTCACCTGCCTGAACGAGGCCTCCGTGCTGCATAACCTGAAGGAGCGGTACTACTCCGGACTCATCTACACCTACTCCGGTCTCTTCTGCGTGGTGGTGAATCCCTACAAGCACCTTCCCATCTACAGCGAGGACATCGTCAACATGTACAAGGGCAAGAAGAGGCACGAGATGCCCCCACACATCTACGCCATCACGGACACGGCCTACAGGAGCATGATGCAGGATCGCGAGGACCAGTCCATCCTCTGCACCGGTGAATCGGGG]




>consensus_23#0
AGAGCCGCAGAGAGGCTGTTTGTGTGTGAACCGACGCGTCTCCGAGCCGAATCTCACCGC
TGCAAACACCAGAAACCGAACCGAGCCCGCCGACAGTGCCTGCCGCTGAAAACCAGCCAT
CATGACGGACGCCGACAAGTTCCTGTACGGGGACCGCAGTGGGGTCAACAACCCTCTGGC
CCAGGCGGATTGGGCCTCCAAGAAGCTGGTGTGGATCCCTTCGGAGAAGCTGGGCTTCGA
GCCCGGCTCCGTGAAGGAGGAGCTCGGGGACGAGTGCATGGTCGAGCTGACGGATTCTGG
CAGAAAGGTGAAGGTGAACAAGGACGACATTCAGAAGATGAACCCGCCCAAGTTCAGCAA
GGTGGAGGACATGGCGGAGCTCACCTGCCTGAACGAGGCCTCCGTGCTGCATAACCTGAA
GGAGCGGTACTACTCCGGACTCATCTACACCTACTCCGGTCTCTTCTGCGTGGTGGTGAA
TCCCTACAAGCACCTTCCCATCTACAGCGAGGACATCGTCAACATGTACAAGGGCAAGAA
GAGGCACGAGATGCCCCCACACATCTACGCCATCACGGACACGGCCTACAGGAGCATGAT
GCAGGATCGCGAGGACCAGTCCATCCTCTGCACCGGTGAATCGGGG

consensusID : consensus_23#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [TGTGTCCGTCCTCTCACTTTGTCCCCCAGACCTACTCCGGTCTCTTCTGCGTGGTGGTGAATCCCTACAAGCACCTTCCCATCTACAGCGAGGACATCGTCAACATGTACAAGGGCAAGAAGAGGCACGAGATGCCCCCACACATCTACGCCATCACGGACACGGCCTACAGGAGCATGATGCAGGGTACCCGTCCTGATTGGCAGTTCACTGACGTGTAACTGGACCGTGTACTTACTGGTTTTTCTGGTGTGTTTGTCAGATCGCGAGGACCAGTCCATCCTCTGCACCGGTGAATCGGGGGCAGGAAAGACTGAAAACACCAAGAAAGTCATTCAGTATCTGGCTTATATCGCCTCATCCTTCAAATCCAAGAAAGATCAGGGCAGCGCAGTTTTATCGCATGGAGAACTGGAGAAGCAGCTGCTGCAGGCAAACCCCATCCTGGAGGCCTTCGGCAACGCAAAGACTGTTAAGAACGACAACTCCTCTAGATTTGGCAAATTCATCAGGATCAACT]

[+] EMBL CA589321             [TGTGTCCGTCCTCTCACTTTGTCCCCCAGACCTACTCCGGTCTCTTCTGCGTGGTGGTGAATCCCTACAAGCACCTTCCCATCTACAGCGAGGACATCGTCAACATGTACAAGGGCAAGAAGAGGCACGAGATGCCCCCACACATCTACGCCATCACGGACACGGCCTACAGGAGCATGATGCAGGGTACCCGTCCTGATTGGCAGTTCACTGACGTGTAACTGGACCGTGTACTTACTGGTTTTTCTGGTGTGTTTGTCAGATCGCGAGGACCAGTCCATCCTCTGCACCGGTGAATCGGGGGCAGGAAAGACTGAAAACACCAAGAAAGTCATTCAGTATCTGGCTTATATCGCCTCATCCTTCAAATCCAAGAAAGATCAGGGCAGCGCAGTTTTATCGCATGGAGAACTGGAGAAGCAGCTGCTGCAGGCAAACCCCATCCTGGAGGCCTTCGGCAACGCAAAGACTGTTAAGAACGACAACTCCTCTAGATTTGGCAAATTCATCAGGATCAACT]




>consensus_23#1
TGTGTCCGTCCTCTCACTTTGTCCCCCAGACCTACTCCGGTCTCTTCTGCGTGGTGGTGA
ATCCCTACAAGCACCTTCCCATCTACAGCGAGGACATCGTCAACATGTACAAGGGCAAGA
AGAGGCACGAGATGCCCCCACACATCTACGCCATCACGGACACGGCCTACAGGAGCATGA
TGCAGGGTACCCGTCCTGATTGGCAGTTCACTGACGTGTAACTGGACCGTGTACTTACTG
GTTTTTCTGGTGTGTTTGTCAGATCGCGAGGACCAGTCCATCCTCTGCACCGGTGAATCG
GGGGCAGGAAAGACTGAAAACACCAAGAAAGTCATTCAGTATCTGGCTTATATCGCCTCA
TCCTTCAAATCCAAGAAAGATCAGGGCAGCGCAGTTTTATCGCATGGAGAACTGGAGAAG
CAGCTGCTGCAGGCAAACCCCATCCTGGAGGCCTTCGGCAACGCAAAGACTGTTAAGAAC
GACAACTCCTCTAGATTTGGCAAATTCATCAGGATCAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_23#0      AGAGCCGCAGAGAGGCTGTTTGTGTGTGAACCGACGCGTCTCCGAGCCGAATCTCACCGC 60
consensus_23#1      ------------------------------------------------------------
                                                                                

consensus_23#0      TGCAAACACCAGAAACCGAACCGAGCCCGCCGACAGTGCCTGCCGCTGAAAACCAGCCAT 120
consensus_23#1      ----------------------------------TGTGTCCGTC-CTCTCACTTTGTCCC 25
                                                       *** * * * **   *    * *  

consensus_23#0      CATGACGGACGCCGACAAGTTCCTGTACGGGGACCGCAGTGGGGTCAACAACCCTCTGGC 180
consensus_23#1      CCAGACCTACTCCGGT---CTCTTCTGCGTGGTGGTGAATCCCTACAAGCACCTTCCCAT 82
                    *  ***  ** ***      ** * * ** **     * *     ***  *** **    

consensus_23#0      CCAGGCGGATTGGGCCTCCAAGAAGCTGGTGTGGATCCCTTCGGAGAAGCTGGGCTTCGA 240
consensus_23#1      CTACAGCGAGGACATCGTCAACATGTACAAGGGCAAGAAGAGGCACGAGATGCCCCCACA 142
                    * *    **      *  *** * *     * * *       * *  ** **  *    *

consensus_23#0      GCCCGGCTCCGTGAAGGAGGAGCTCGGGGACGAGTGCATGGTCGAGCTGACGGATTCTGG 300
consensus_23#1      CATCTACGCCATCACGGACACGGCCT---ACAGGAGCATGATGCAGGGTACCCGTCCTGA 199
                       *  * ** * * ***   *  *    **  * ***** *  **   **   * *** 

consensus_23#0      CAGAAAGGTGAAGGTGAACAAGGACG-ACATTCAGAAGATGAACCCGCCCAAGTTCAGCA 359
consensus_23#1      TTGGCAGTT---------CACTGACGTGTAACTGGACCGTGTACTTACT--GGTTTTTC- 247
                      *  ** *         **  ****   *    **   ** **   *    ***   * 

consensus_23#0      AGGTGGAGGACATGGCGGAGCTCACCTGCCTGAACGAGGCCTCCGTGCTGCATAACCTGA 419
consensus_23#1      ---TGGTGTGTTTGTCAGA--TCGCGAGGACCAGTCCATCCTCTGCACCGGTGAATCGGG 302
                       *** *    ** * **  ** *  *    *      **** *  * *   ** * * 

consensus_23#0      AGGAGCGGTACTACTCCGGACTCATCTACACCTACTCCGGTCTCTTCTGCGTGGTGGTGA 479
consensus_23#1      GGCA--GGAAAGACTGAAAACACCAAGAAAGTCATTC-AGTATCTGGCTTATATCGCCTC 359
                     * *  ** *  ***    ** *    * *   * **  ** ***      *   *    

consensus_23#0      ATCCCTACAAGCACCTTCCCATCTACAGCGAGGACATCGTCAACATGTACAAGGGCAAGA 539
consensus_23#1      ATCCTTCAAA-------TCCAAGAAAGATCAGGGCAGCGCAGTTTTATCGCATGG--AGA 410
                    **** *  **        ***   *     *** ** **      * *   * **  ***

consensus_23#0      AGAGGCACGAGATGCCCCCACACATCTACGCCATCACGGACACGGCCTACAGGAGCATGA 599
consensus_23#1      ACTGG-AGAAGCAGCTGCTGCAGGCAAACCCCATCCTGGAGGCCTTCGGCAACGCAAAGA 469
                    *  ** *  **  **  *  **     ** *****  ***  *   *  **     * **

consensus_23#0      TGCAGGATCGCGAGGACCAGTCCATCCTCTGCACCGGTGAATCGGGG------ 646
consensus_23#1      CTGTTAAGAACGACAACTCCTCTAGATTTGGCA--AATTCATCAGGATCAACT 520
                          *   ***  **   ** *   *  ***    *  *** **

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)