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Takifugu rubripes
cluster # 2300 cluster # 2300       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2300#0 length = 723 sequences # 1  
 consensus_2300#1 length = 665 sequences # 4  
consensusID : consensus_2300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence 
                              [CCGTAAATACAGACGAGCCAAATTTTTCTTACGACTTCTTCTCACTTTTCTCCGCGGGTGAACCTAAGTAGCCATGACTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACGAAGGCAGCTCGCAAGAGTGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCAGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGCAAGCTTCCATTCCAGCGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCAGCCATCGGAGCTCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGTCTGTTTGAGGACACCAACCTGTGTGCCATCCACGCCAAACGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGTGAACGTGCTTAAGCGTTCCACGTGGTCCCTCCTCCTTTTCACTTCCTCCTGCCCTTCTGTCACCGATCTGTCTCTCCGTCCCTCGTCCCCATCACCCGCCTTCCCCGCTCTTCCTTCCTGTGTTAGTAGTATGTAGAGGAAAACTGATTATATTATGAATAAAGTGTATAGTTCTGCTTTTCTTAGTGCTTTTGACAAAAACACTTCTCGGGTACTCTTTCATGTGCATGTGCGTGCTGAGTTCTGGTGAT]

[+] EMBL CA846176             [CCGTAAATACAGACGAGCCAAATTTTTCTTACGACTTCTTCTCACTTTTCTCCGCGGGTGAACCTAAGTAGCCATGACTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACGAAGGCAGCTCGCAAGAGTGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCAGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGCAAGCTTCCATTCCAGCGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCAGCCATCGGAGCTCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGTCTGTTTGAGGACACCAACCTGTGTGCCATCCACGCCAAACGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGTGAACGTGCTTAAGCGTTCCACGTGGTCCCTCCTCCTTTTCACTTCCTCCTGCCCTTCTGTCACCGATCTGTCTCTCCGTCCCTCGTCCCCATCACCCGCCTTCCCCGCTCTTCCTTCCTGTGTTAGTAGTATGTAGAGGAAAACTGATTATATTATGAATAAAGTGTATAGTTCTGCTTTTCTTAGTGCTTTTGACAAAAACACTTCTCGGGTACTCTTTCATGTGCATGTGCGTGCTGAGTTCTGGTGAT]




>consensus_2300#0
CCGTAAATACAGACGAGCCAAATTTTTCTTACGACTTCTTCTCACTTTTCTCCGCGGGTG
AACCTAAGTAGCCATGACTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGC
CCCCCGTAAACAGCTGGCCACGAAGGCAGCTCGCAAGAGTGCCCCTTCCACTGGGGGTGT
CAAGAAGCCCCATCGCTACAGGCCAGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCA
GAAGTCCACCGAGTTGCTGATCCGCAAGCTTCCATTCCAGCGCCTGGTGAGAGAAATCGC
CCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCAGCCATCGGAGCTCTGCAGGAGGC
CAGCGAGGCCTACCTGGTGGGTCTGTTTGAGGACACCAACCTGTGTGCCATCCACGCCAA
ACGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGTGAACGTGC
TTAAGCGTTCCACGTGGTCCCTCCTCCTTTTCACTTCCTCCTGCCCTTCTGTCACCGATC
TGTCTCTCCGTCCCTCGTCCCCATCACCCGCCTTCCCCGCTCTTCCTTCCTGTGTTAGTA
GTATGTAGAGGAAAACTGATTATATTATGAATAAAGTGTATAGTTCTGCTTTTCTTAGTG
CTTTTGACAAAAACACTTCTCGGGTACTCTTTCATGTGCATGTGCGTGCTGAGTTCTGGT
GAT

consensusID : consensus_2300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 665
fasta sequence 
                              [CGAGAACAACGCTTAAGAGACTCGAGAATAAATTCGATTTTTTTGGACTGCAATCACTCAACGATTTTTCCGAGGTGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGTAAGCTTCCATTCCAACGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAAAGTGCAGCCATCGGAGCTCTGCAGGAAGCCAGTGAGGCCTACCTGGTGGGACTGTTTGAGGACACTAACCTGTGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGAGAACGTGCTTAAAATTTTTTGTGATTCCTTCTATGTTGTCCCTTCTTCCAACACCCTTTCTACCCCTCTCTACATTTAGTTACACGTTTGGTTTGCCGTTCCCTATATAATATTGTGCGAACTGTCACTTGGGGTGCCTATGTCCTCCTTGGAGCTACTAATAGCAGAGTTTTCTT]

[+] EMBL FR0061487            [CGAGAACAACGCTTAAGAGACTCGAGAATAAATTCGATTTTTTTGGACTGCAATCACTCAACGATTTTTCCGAGGGGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGGTGCTGATCCGTAAGCTTCCATTCCAACGCCTGGTGAGAGAAATCGCCCAGGACT                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BU806174             [      CAACGCTTAAGAGACTCGAGAATAAATTCGATTTTTTTGGACTGCAATCACTCAACGATTTTTCCGAGGTGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGTAAGCTTCCATTCCAACGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAAAGTGCAGCCATCGGAGCTCTGCAGGAAGCCAGTGAGGCCTACCTGGTGGGACTGTTTGAGGACACTAACCTGTGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGAGAACGTGCTTAAAA ATTTTGTGATTCCTTCTATGTTGTCCCTTATTCCAACACCCTTTCTACCCCT                                                                                                             ]
[+] EMBL BU808405             [                                                  CAATCACTCAACGATTTTTCCGAGGTGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGTGAGATCCGTCGTTATCAGAAGTCCACCGAGTTGCTGATCCGTAAGCTTCCATTCCAACGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAAAGTGCAGCCATCGGAGCTCTGCAGGAAGCCAGTGAGGCCTACCTGGTGGGACTGTTTGAGGACACTAACCTGTGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGAGAACGTGCTTAAAATTTTTTGTGATTCCTTCTATGTTGTCCCTTCTTCCAACACCCTTTCTACCCCTCTCTACATTTAGTTA                                                                                              ]
[+] EMBL FR0055832            [                                                                                                                                                                                                                                                                                                                                                                                                GCCTACCTGGTGGGACTGTTTGAGGACACTAACCTGTGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAACGACATCCAGCTGGCACGCCGTATCCGTGGAGAACGTGCTTAAAATTTTTTGTGATTCCTTCTATGTTGTCCCTTCGTCCAACACCCTTTCTACCCCTCTCTATATTTAGTTACACGTTTGGTTTGCCGTTCCCTATATAATATTGTGCGAACTGTCACTTGGGGTGCCTATGTCCTCCTTGGAGCTACTAATAGCAGAGTTTTCTT]




>consensus_2300#1
CGAGAACAACGCTTAAGAGACTCGAGAATAAATTCGATTTTTTTGGACTGCAATCACTCA
ACGATTTTTCCGAGGTGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAA
TCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCC
CCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGT
GAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGTAAGCTTCCATTCCAACGC
CTGGTGAGAGAAATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAAAGTGCAGCCATC
GGAGCTCTGCAGGAAGCCAGTGAGGCCTACCTGGTGGGACTGTTTGAGGACACTAACCTG
TGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAAAGACATCCAGCTGGCACGCCGT
ATCCGTGGAGAACGTGCTTAAAATTTTTTGTGATTCCTTCTATGTTGTCCCTTCTTCCAA
CACCCTTTCTACCCCTCTCTACATTTAGTTACACGTTTGGTTTGCCGTTCCCTATATAAT
ATTGTGCGAACTGTCACTTGGGGTGCCTATGTCCTCCTTGGAGCTACTAATAGCAGAGTT
TTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2300#0      ---------CCGTAAATACAGACGAGC-CAAATT---TTTCTTACGACT----TCTTCTC 43
consensus_2300#1      CGAGAACAACGCTTAAGAGACTCGAGAATAAATTCGATTTTTTTGGACTGCAATCACTCA 60
                               *  * ** * *  ****   *****   *** **  ****    **     

consensus_2300#0      ACTTTTCTCCGCGGGTGAACCTAAGTAGCCATGACTCGTACCAAGCAGACTGCCCGTAAA 103
consensus_2300#1      ACGATTTTTCCGAGGTGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAA 120
                      **  ** * *   ******************** **************************

consensus_2300#0      TCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACGAAGGCAGCTCGCAAGAGTGCC 163
consensus_2300#1      TCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCC 180
                      ************************************** ***************** ***

consensus_2300#0      CCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCAGGCACTGTGGCTCTGCGT 223
consensus_2300#1      CCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGT 240
                      ***************************************** ******************

consensus_2300#0      GAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGCAAGCTTCCATTCCAGCGC 283
consensus_2300#1      GAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGTAAGCTTCCATTCCAACGC 300
                      ***************************************** ************** ***

consensus_2300#0      CTGGTGAGAGAAATCGCCCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCAGCCATC 343
consensus_2300#1      CTGGTGAGAGAAATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAAAGTGCAGCCATC 360
                      ******************************** ************** ** *********

consensus_2300#0      GGAGCTCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGTCTGTTTGAGGACACCAACCTG 403
consensus_2300#1      GGAGCTCTGCAGGAAGCCAGTGAGGCCTACCTGGTGGGACTGTTTGAGGACACTAACCTG 420
                      ************** ***** ***************** ************** ******

consensus_2300#0      TGTGCCATCCACGCCAAACGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGT 463
consensus_2300#1      TGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAAAGACATCCAGCTGGCACGCCGT 480
                      ***************** ***** ************************************

consensus_2300#0      ATCCGTGGTGAACGTGCTTAAGCGTTCCACGTGGTCCCTCCTCCTTTTCACTTCCTCCTG 523
consensus_2300#1      ATCCGTGGAGAACGTGCTTAAA-ATTTTTTGTGATTCCTTCTATGTTGT----------- 528
                      ******** ************   **    *** * *** **   **             

consensus_2300#0      CCCTTCTGTCACCGATCTGTCTCTCCGTCCCTCGTCCCCATCACCCGCCTTCCCCGCTCT 583
consensus_2300#1      CCCTTCTTCCAACACCCTTTCTACCCCTCTCTACATTTAGTTACACGTTTGGTTTGCCGT 588
                      *******  ** *   ** ***  ** ** **        * ** **  *     **  *

consensus_2300#0      TCCTTCCTGTGTTAGTAGTATGTAGAGGAAAACTGATTATATTATGAATAAAGTGTATAG 643
consensus_2300#1      TCC---CTATAT-AATATTGTGCGAACTGTCACT--------------TGGGGTGCCTA- 629
                      ***   ** * * * ** * **   *     ***              *   ***  ** 

consensus_2300#0      TTCTGCTTTTCTTAGTGCTTTTGACAAAAACACTTCTCGGGTACTCTTTCATGTGCATGT 703
consensus_2300#1      ---TGTCCTCCTTGGAGCTACTAATAGCAGAGTTTTCTT--------------------- 665
                         **   * *** * ***  * * *  *    **                         

consensus_2300#0      GCGTGCTGAGTTCTGGTGAT 723
consensus_2300#1      --------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)