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Takifugu rubripes
cluster # 2307 cluster # 2307       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2307#0 length = 739 sequences # 3  
 consensus_2307#1 length = 382 sequences # 2  
consensusID : consensus_2307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 739
fasta sequence 
                              [TGTGTGAGTGTGTGTCAGCGCTCTCTTCTGCCAAAATTGACGGCTGACTGACACTCAGGAGAAGAAGCTGAAATTAAAGGAAATTATTCATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGTAAGTTTGAGGAATTCTAATTTATTTTGCCTTGAAAATCTGATCCTTTCTCATCAAATGGTGCTTATAACCACATGAGAACTTAGACTTTTATATTGCTTTGTCTGACATCCATATTTTGGTCCCATTTAATAGTCTTTATAGTCTAGTCTCTTGGAGAGAAACTCCCATCCTTCTTAGCTGCAATGAGACCCCCATGTGAAAAAT-CCAGGTTTTTAAGAAAGGGGTGTTTTGCAGAGGAAACTGATACGGATAGCTGAAACACACACATACACTCGGTCAGGTGACGGCGGTGGTTGCGGGTCTGTTTCGGCGGGTGTTATCACTAACCTAGAGGCCACACAGCACAAAAGGGGACTTGGGAAATAAGAATCTGCTCATGAGGAGACAATCAGGGGGCAATGACAGCATGTATTGCGTTGAATTACATAATGGTGAAATTCTATACATGCAGCCAGGTGGTTTTAGGGGGAGATGGGGATTTGTTGGTGGGACGGAGTGGTGCTGACTTCCTGTAGCTGATGTAATGTTAAGGTAGAGACAGGTGTATTTGAAAGTAAGTCTATGAAGGTTACTTGGCTCATGTCCCAAATGTGGTGATTCTAGTTTCCCC]

[+] EMBL BU808630             [TGTGTGAGTGTGTGTCAGCGCTCTCTTCTGCCAAAATTGACGGCTGACTGACACTCAGGAGAAGAAGCTGAAATTAAAGGAAATTATTCATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGTAAGTTTGAGGAATTCTAATTTATTTTGCCTTGAAAATCTGATCCTTTCTCATCAAATGGTGCTTATAACCACATGAGAACTTAGACTTTTATATTGCTTTGTCTGACATCCATATTTTGGTCCCATTTAATAGTCTTTATAGTCTAGTCTCTTGGAGAGAAACTCCCATCCTTCTTAGCTGCAATGAGACCCCCATGTGAAAAAT CCAGGTTTTTAAGAAAGGGGTGTTTTGCAGAGGAAACTGATACGGATAGCTGAAACACACACATACACTCGGTCAGGTGACGGCGGTGGTTGCGGGTCTGTTTCGGCGGGTGTTATCACTAACCTAGAGGCCACACAGCACAAAAGGGGACTTGGGAAATAAGAATCTGCTCATGAGGAGACAATCAGGGGGCAATGACAGCATGTATTGCGTTGAATTACATAATGGTGAAATTCTATACATGCAGCC                                                                                                                                                             ]
[+] EMBL FR0061360            [                               CAAAATTGACGGCTGACTGACACTCAGGAGAAGAAGCTGAAATTAAAGGAAATTATTCATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGTAAGTTTGAGGAATTCTAATTTATTTTGCCTTGAAAATCTGATCCTTTCTCATCAAATGGTGCTTATAACCACATGAGAACTTAGACTTTTATATTGCTTTGTCTGACATCCATATTTTGGTCCCATTTAATAGTCTTTATAGTCTAGTCTCTTGGAGAGAAACTCCCATCCTTCTTAGCTGCAATGAGACCCCCATGTGAAAAAT CCAGGTTTTTAAGAAAGGGGTGTTTTGCAGAGGAAACTGATACGGATAGCTGAAACACACACATA                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA588570             [                                                                                                                                                                                                                                                                                             ccgtcaTGGCATCCTTCTTAGCTGCAATGAGACCCCCATGTGACATATAAGAGGTTTTTAAGAAAGGGGTGTTTTGCAGAGGAAACTGATACGGATAGCTGAAACACACACATACACTCGGTCAGGTGACGGCGGTGGTTGCGGGTCTGTTTCGGCGGGTGTTATCACTAACCTAGAGGCCACACAGCACAAAAGGGGACTTGGGAAATAAGAATCTGCTCATGAGGAGACAATCAGGGGGCAATGACAGCATGTATTGCATTGAATTACATAATGGTGAAATTCTATACATGCAGCCAGGTGGTTTTAGGGGGAGATGGGGATTTGTTGGTGGGACGGAGTGGTGCTGACTTCCTGTAGCTGATGTAATGTTAAGGTAGAGACAGGTGTATTTGAAAGTAAGTCTATGAAGGTTACTTGGCTCATGTCCCAAATGTGGTGATTCTAGTTTCCCC]




>consensus_2307#0
TGTGTGAGTGTGTGTCAGCGCTCTCTTCTGCCAAAATTGACGGCTGACTGACACTCAGGA
GAAGAAGCTGAAATTAAAGGAAATTATTCATCTCACCTGGACGAGAGAGATGACCAAGGA
GACTGAGTAAGTTTGAGGAATTCTAATTTATTTTGCCTTGAAAATCTGATCCTTTCTCAT
CAAATGGTGCTTATAACCACATGAGAACTTAGACTTTTATATTGCTTTGTCTGACATCCA
TATTTTGGTCCCATTTAATAGTCTTTATAGTCTAGTCTCTTGGAGAGAAACTCCCATCCT
TCTTAGCTGCAATGAGACCCCCATGTGAAAAATCCAGGTTTTTAAGAAAGGGGTGTTTTG
CAGAGGAAACTGATACGGATAGCTGAAACACACACATACACTCGGTCAGGTGACGGCGGT
GGTTGCGGGTCTGTTTCGGCGGGTGTTATCACTAACCTAGAGGCCACACAGCACAAAAGG
GGACTTGGGAAATAAGAATCTGCTCATGAGGAGACAATCAGGGGGCAATGACAGCATGTA
TTGCGTTGAATTACATAATGGTGAAATTCTATACATGCAGCCAGGTGGTTTTAGGGGGAG
ATGGGGATTTGTTGGTGGGACGGAGTGGTGCTGACTTCCTGTAGCTGATGTAATGTTAAG
GTAGAGACAGGTGTATTTGAAAGTAAGTCTATGAAGGTTACTTGGCTCATGTCCCAAATG
TGGTGATTCTAGTTTCCCC

consensusID : consensus_2307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 382
fasta sequence 
                              [GAGAAGAAGCTGAAATTAAAGGGGGTTATTGATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGACTCTGGGACTGGNTTTTCAGAGCGAGAACTTCAACTTTCACCGTTATAGTAACCTCATCATGGACCCCTGGTCCTACATAGACAGCCCTGGTCCAGAGGAGAACCACTCCAAACCCAGACTTCGGCCAGGAGACGACCTGGCAGCCTTAACCATGCTCTATGAACAGGGCAAGAGCCAGAAAGACCAGAAGCTTGTTGGCATGCACCGCATAGGCAACATCTGCAAAACAGAAAAGACTTCCACCAGCACCAATGACTTTGCGCATTTGGAGACGTCCCCCGGCGTCATGAAGATCCTCTCTGAAAACATTC]

[+] EMBL FR0061706            [GAGAAGAAGCTGAAATTAAAGGAAATTATTGATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGACTCTGGGACTGGNTTTTCAGAGCGAGAACTTCAACTTTCACCGTTATAGTAACCTCATCATGGACCCCTGGTCCTACATAGACAGCCCTGTTCCAGAGCAGAACCACTCCAAACCCAGACTTCAGCCAGGAGACGACCTGGCAGCCTTAACCATGCTCTATGAACAGTGCAAGAGCCAGAAAGACCAGAAGCTTGTTGGCATGCACCGCATAGGCAACATCTGCAAAACAGAAAAGACTTCCACCAGCACCAATGACTTTGCGCATTTGGAGACGTCCCCCGGCGTCATGAAGATCCTCTCTGAAAACATTC]
[+] EMBL FR0061150            [      AAGCTGAAATTAAAGGGGGTTATTCATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGACTCTGGGACTGGTTTTTCAGAGCGAGAACTTCAACTTTCACCGTTATAGTAACCTCATCATGGACCCCTGGTCCTACATAGACAGCCCTGGTCCAGAGGAGAACCACTCCAAACCCAGACTTCGGCCAGGAGACGACCTGGCTGCCTTAACCATGCTCTATGAACAGGGCAA                                                                                                                                            ]




>consensus_2307#1
GAGAAGAAGCTGAAATTAAAGGGGGTTATTGATCTCACCTGGACGAGAGAGATGACCAAG
GAGACTGAGACTCTGGGACTGGNTTTTCAGAGCGAGAACTTCAACTTTCACCGTTATAGT
AACCTCATCATGGACCCCTGGTCCTACATAGACAGCCCTGGTCCAGAGGAGAACCACTCC
AAACCCAGACTTCGGCCAGGAGACGACCTGGCAGCCTTAACCATGCTCTATGAACAGGGC
AAGAGCCAGAAAGACCAGAAGCTTGTTGGCATGCACCGCATAGGCAACATCTGCAAAACA
GAAAAGACTTCCACCAGCACCAATGACTTTGCGCATTTGGAGACGTCCCCCGGCGTCATG
AAGATCCTCTCTGAAAACATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2307#0      TGTGTGAGTGTGTGTCAGCGCTCTCTTCTGCCAAAATTGACGGCTGACTGACACTCAGGA 60
consensus_2307#1      ----------------------------------------------------------GA 2
                                                                                **

consensus_2307#0      GAAGAAGCTGAAATTAAAGGAAATTATTCATCTCACCTGGACGAGAGAGATGACCAAGGA 120
consensus_2307#1      GAAGAAGCTGAAATTAAAGGGGGTTATTGATCTCACCTGGACGAGAGAGATGACCAAGGA 62
                      ********************   ***** *******************************

consensus_2307#0      GACTGAGTAAGTTTGAGGAATTCTAATTTATTTTGCCTTGAAAATCTGATCCTTTCTCAT 180
consensus_2307#1      GACTGAG--ACTCTGGGA----CTGGNTT--TTCAGAGCGAGAACTTCAACTTTCACCGT 114
                      *******  * * ** *     **   **  **      ** **  * * * **   * *

consensus_2307#0      CAAATGGTGCTTATAACCACATGAGAACTTAGACTTTTATATTGCTTTGTCTGACATCCA 240
consensus_2307#1      TATAGTAACCTCAT-----CATGGACCCCTGG--TCCTACATAGACAGCCCTG--GTCCA 165
                       * *     ** **     ****    * * *  *  ** ** *      ***   ****

consensus_2307#0      TATTTTGGTCCCATTTAAT--AGTCTTTATAGTCTAGTCTCTTGGAGAGAAACTCCCATC 298
consensus_2307#1      GAGGAGAACCACTCCAAACCCAGACTTCGGCCAGGAGACGACCTGGCAGCCTTAACCATG 225
                       *       * *    **   ** ***        ** *     *  **      **** 

consensus_2307#0      CTTCTTAGCTGCAATGAGACCCCCATGTGAAAAATCCAGGTTTTTAAGAAAGGGGTGTTT 358
consensus_2307#1      CTCTATGAACAGGGCAAGAGCC------AGAAAGACCAGAAGCTTGTT---GGCATGCAC 276
                      **   *          *** **        ***  ****    **      **  **   

consensus_2307#0      TGCAGAGGAAACTGATACGGATAGCTGAAACACACACATACACTCGGTCAGGTGACGGCG 418
consensus_2307#1      CGCATAGGCAAC--ATCTGCAAAACAGAAA---AGACTTCCACCAGCACCAATGACTTTG 331
                       *** *** ***  **  * * * * ****   * ** * ***  *  *   ****   *

consensus_2307#0      -GTGGTTGCGGGTCTGTTTCGGCGGGTGTTATCACTAACCTAGAGGCCACACAGCACAAA 477
consensus_2307#1      CGCATTTGGAGACGTCCCCCGGCGT-CATGAAGATCCTCTCTGAAAACATTC-------- 382
                       *   ***  *   *    *****    * *  *    *   **   **  *        

consensus_2307#0      AGGGGACTTGGGAAATAAGAATCTGCTCATGAGGAGACAATCAGGGGGCAATGACAGCAT 537
consensus_2307#1      ------------------------------------------------------------
                                                                                  

consensus_2307#0      GTATTGCGTTGAATTACATAATGGTGAAATTCTATACATGCAGCCAGGTGGTTTTAGGGG 597
consensus_2307#1      ------------------------------------------------------------
                                                                                  

consensus_2307#0      GAGATGGGGATTTGTTGGTGGGACGGAGTGGTGCTGACTTCCTGTAGCTGATGTAATGTT 657
consensus_2307#1      ------------------------------------------------------------
                                                                                  

consensus_2307#0      AAGGTAGAGACAGGTGTATTTGAAAGTAAGTCTATGAAGGTTACTTGGCTCATGTCCCAA 717
consensus_2307#1      ------------------------------------------------------------
                                                                                  

consensus_2307#0      ATGTGGTGATTCTAGTTTCCCC 739
consensus_2307#1      ----------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)