These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1200 fasta sequence [AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTTGATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACTGGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAATGCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACCACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCGCTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATTGTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGAAAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACTTCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCAGATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCCATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGATGCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT] [+] EMBL CA846745 [AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTTGATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACTGGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAATGCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACCACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTAC ] [+] EMBL FR0056487 [ CAATTTAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAGTGAATTCACAGTGAAACTTTTGAATGTTTTGCTCGCGGTCTATTGTAACTGTTA ] [+] EMBL CA846804 [ CCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG ] [+] EMBL CA846968 [ AATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCGCTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATTGTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGAAAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACTTCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCAGATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCCATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGATGCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT] consensusID : consensus_2310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [TCTCTGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG] [-] EMBL CA332469 [TCTCTGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2310#0 AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTT 60 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 GATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACT 120 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 GGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAAT 180 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 GCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACC 240 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 ACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGT 300 consensus_2310#1 -------------------------------------------------TCTCTGCGGGT 11 **** ****** consensus_2310#0 GTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAG 360 consensus_2310#1 GTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAG 71 ************************************************************ consensus_2310#0 ACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGG 420 consensus_2310#1 ACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGG 131 ************************************************************ consensus_2310#0 GCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATT 480 consensus_2310#1 GCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATT 191 ************************************************************ consensus_2310#0 TAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGG 540 consensus_2310#1 TAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGG 251 *************** ******************************************** consensus_2310#0 ACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATG 600 consensus_2310#1 ACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATG 311 ************************************************************ consensus_2310#0 AAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATAT 660 consensus_2310#1 AAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATA---------- 361 ************************************************** consensus_2310#0 TCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTT 720 consensus_2310#1 ----------------------------------------GTGAAACTTTTGAAGGTTTT 381 ******************** consensus_2310#0 GCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG 780 consensus_2310#1 GCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG 441 ************************************************************ consensus_2310#0 CTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATT 840 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 GTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGA 900 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 AAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACT 960 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 TCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCA 1020 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 GATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCC 1080 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 ATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGAT 1140 consensus_2310#1 ------------------------------------------------------------ consensus_2310#0 GCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT 1200 consensus_2310#1 ------------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |