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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2318#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence
[AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTAAGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGCGTCAGGGGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCTGAAGGTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCTCTGTGAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGAGAACGAATGCCAGAATTACAAGCAGTGTCTGGAGCTG]
[+] EMBL BU807495 [AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCTGAAGGTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCTCTGTGAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGAGAACGAATGCCAGAATTACAAGCAGTGTCTGGAGCTG]
[+] EMBL FR0060888 [ tTACGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGCGTCAGGAGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCAT ]
consensusID : consensus_2318#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 629 fasta sequence
[ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCTAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGGTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGCATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTG]
[+] EMBL CA589973 [ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCTAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGGTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGCATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTG]
[+] EMBL CA591273 [ TGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCTAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGGTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGCATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACA ]
consensusID : consensus_2318#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence
[AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGTGGGAGCACCGCAGCAGACTTAGCGTTCAGAAATCTGAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAATAAACACAGCCATGTGTAGCTCACATTTT]
[+] EMBL FR0059776 [AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGTGGGAGCACCGCAGCAGACTTAGCGTTCAGAAATCTGAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAATAAACACAGCCATGTGTAGCTCACATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2318#0 AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTA 60
consensus_2318#1 -ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTA 59
consensus_2318#2 ------------------------------------------------------------
consensus_2318#0 AGATCATAGAGTTGATTTCTAAGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATT 120
consensus_2318#1 AGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATT 119
consensus_2318#2 -------AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATT 53
********** ** * ***********************************
consensus_2318#0 TTCACGAATAACC----------------------------------------------- 133
consensus_2318#1 TTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGC 179
consensus_2318#2 TTCACGAATAACC----------------------------------------------- 66
*************
consensus_2318#0 ------------------------------------------------------------
consensus_2318#1 TAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTG 239
consensus_2318#2 ------------------------------------------------------------
consensus_2318#0 ------------------------------------------------------------
consensus_2318#1 GTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCG 299
consensus_2318#2 ------------------------------------------------------------
consensus_2318#0 ---------------TTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCA 178
consensus_2318#1 CATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCA 359
consensus_2318#2 ---------------TTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCA 111
*********************************************
consensus_2318#0 GCTTCGTGCGTCAGGGGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCG 238
consensus_2318#1 GCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCG 419
consensus_2318#2 GCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCG 171
******** ***** * *******************************************
consensus_2318#0 ACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGG 298
consensus_2318#1 ACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGG 479
consensus_2318#2 ACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGG 231
************************************************************
consensus_2318#0 CGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATG 358
consensus_2318#1 CGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATG 539
consensus_2318#2 CGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGTGG-----GAGCACCGCAGCAGACTTA 286
********************************* ** * * ** * *
consensus_2318#0 GCGTGTCAAGAAAGTACATCCCACCAGCACGCATG--ATGTCAACGGAGAGCGCCAACAG 416
consensus_2318#1 GCGTGTCAAGAAAGTACATCCCACCAGCACGCATG--ATGTCAACGGAGAGCGCCAACAG 597
consensus_2318#2 GCGT-TCAGAAATCTGAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAA 345
**** *** ** * * * * * *** * ** * ** * * **
consensus_2318#0 CTTCACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCT 476
consensus_2318#1 CTTCACGCTGATTGGAGAAGCATCTGATTGTG---------------------------- 629
consensus_2318#2 -TAAACACAGCCATGTGTAGC-TCACATTTT----------------------------- 374
* ** * * * * *** ** *** *
consensus_2318#0 GAAGGTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCT 536
consensus_2318#1 ------------------------------------------------------------
consensus_2318#2 ------------------------------------------------------------
consensus_2318#0 CTGTGAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGA 596
consensus_2318#1 ------------------------------------------------------------
consensus_2318#2 ------------------------------------------------------------
consensus_2318#0 GAACGAATGCCAGAATTACAAGCAGTGTCTGGAGCTG 633
consensus_2318#1 -------------------------------------
consensus_2318#2 -------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |