These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [CGTTGATAAAGTCGTTTGCAGCAGGTATGTTGTGGTCATTACACTATTAAAGGGGAACTCTTGGTTTGCTCGGACACAAATCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCATGCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGGAGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGGTTCAATGACAGTCTCAGGTTAAATATGGCACCCTTTGGTGTCAAGGTCCTCTGCATTGAGCCAGGCTTCTTCAAGACCAATGTGACTGATGTTGCCATCATCAGCAAAAGTGCCAAAATTGTGTGGGACAGATTACCCCAGGATGTCCAGGACGAC] [+] EMBL CA588112 [CGTTGATAAAGTCGTTTGCAGCAGGTATGTTGTGGTCATTACACTATTAAAGGGGAACTCTTGGTTTGCTCGGACACAAATCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCATGCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGGAGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGGTTCAATGACAGTCTCAGGTTAAATATGGCACCCTTTGGTGTCAAGGTCCTCTGCATTGAGCCAGGCTTCTTCAAGACCAATGTGACTGATGTTGCCATCATCAGCAAAAGTGCCAAAATTGTGTGGGACAGATTACCCCAGGATGTCCAGGACGAC] [+] EMBL CA589529 [ CCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCATGCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGGAGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGTTTCAATGACAGTCTCAGGTTAAATATGGCACCCTTTGGTGTCAAGGTCCTCTGCATTGAGCCAGGCTTCTTCAAGACC ] consensusID : consensus_2337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 694 fasta sequence [TTTAATCCCACGGCTGCTCTTAACAAACCGTTTCAGACCGCCGATAAAGTCGTTTGCAGCAGTCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGATGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGGTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCAGGCCCCTGTGACTGGCTCACCATCGACGACTACGAATCCATGCTGGAAGTGAACCTGAACGGCGTGATCGCAGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGGCAGGGAGGGTCGGGGCCAGAGGAGGCCCCTACAGCGTCTCCAAGTACGGCGTGGAGGGTTTCAACGACAGTCTCAGGTTGAACATGGCGCCGTTTGGTGTGAAAGTCATCTGCATTGAGCCCGGCTACTTCAAG] [+] EMBL CA590622 [TTTAATCCCACGGCTGCTCTTAACAAACCGTTTCAGACCGTCGATAAAGTCGTTTGCAGCAGTCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGATGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCATGCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGGAGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGTTTC ] [+] EMBL CA588298 [ tcCTGTTAAAGTCGTTTGCAGCAGTCATGTACCTGTACCTCCTGCGTCTGCTGCTTTTCTACTACCTGTACCGATGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGGNGnccaag ] [+] EMBL BU807344 [ GTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACATGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGTTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCAGGCCCCTGTGACTGGCTCACCATTGACGACTACAAATCCATGCTGGAAGTGAACCTAAATGGCGTGATCTCAGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACATGGCCAGTGTAGCAGGGAGGGTCAGTATCAGTGGAGGCCCCTACTGCGTCTCCAAGTTTGGCGTCGAGGCTTTCAACGACAGTCTCAGGTTGAACATGGCGCCGTTTGGTGTGAAAGTCATCTGCATTGAGCCCGGCTACTTCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2337#0 CGTTGATAAAGTCGTTTGCAGCAGGTATGTTGTGGTCATTACACTATTAAAGGGGAACTC 60 consensus_2337#1 ---------------TTTAATCCCACG-GCTGCTCTTAACAAACCGTTTCAGACCGCCGA 44 ** * * * ** * * * ** ** ** * consensus_2337#0 TTGGTTTGCTCGGACACAAATCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTA 120 consensus_2337#1 TAAAGTCGTTTG--CAGCAGTCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTA 102 * * * * * ** * **************************************** consensus_2337#0 CCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTA 180 consensus_2337#1 CCTGTACCGATGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTA 162 ********** ************************************************* consensus_2337#0 CATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGG 240 consensus_2337#1 CATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGG 222 ************************************************************ consensus_2337#0 ATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTG 300 consensus_2337#1 ATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTG 282 ************************************************************ consensus_2337#0 CTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGT 360 consensus_2337#1 CTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGT 342 ************************************************************ consensus_2337#0 TGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGC 420 consensus_2337#1 TGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGGTTATGGGCTGTGGTGAACAACGC 402 ************************************ *********************** consensus_2337#0 AGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCAT 480 consensus_2337#1 AGGCGTGTCCGTTCCATCAGGCCCCTGTGACTGGCTCACCATCGACGACTACGAATCCAT 462 ****************** * ************************ ************** consensus_2337#0 GCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAA 540 consensus_2337#1 GCTGGAAGTGAACCTGAACGGCGTGATCGCAGTGACCCTGAGCGTCCTGCCGCTCATCAA 522 **** **** ** ********** ***** ***************************** consensus_2337#0 GAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGG 600 consensus_2337#1 GAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGGCAGGGAGGGTCGGGGCCAGAGG 582 ************************************* ********** ***** *** consensus_2337#0 AGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGGTTCAATGACAGTCTCAGGTTAAA 660 consensus_2337#1 AGGCCCCTACAGCGTCTCCAAGTACGGCGTGGAGGGTTTCAACGACAGTCTCAGGTTGAA 642 *** ******* *********************** ***** ************** ** consensus_2337#0 TATGGCACCCTTTGGTGTCAAGGTCCTCTGCATTGAGCCAGGCTTCTTCAAGACCAATGT 720 consensus_2337#1 CATGGCGCCGTTTGGTGTGAAAGTCATCTGCATTGAGCCCGGCTACTTCAAG-------- 694 ***** ** ******** ** *** ************* **** ******* consensus_2337#0 GACTGATGTTGCCATCATCAGCAAAAGTGCCAAAATTGTGTGGGACAGATTACCCCAGGA 780 consensus_2337#1 ------------------------------------------------------------ consensus_2337#0 TGTCCAGGACGAC 793 consensus_2337#1 ------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |