These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 627 fasta sequence [GGATCACCGGCATCCACAGGACCCGCACGATGGCCGAGCTCCCCCCGGTAGAGTGGTGTTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATGAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTCCGAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTTGTTGAGGACAGAGCCAAGGAGGGTGTGATTTATGTGGAGGCCAGGTACAGTCCACACTTCCTGGCAAACACGAAGGTGGATCCTATACCATGGAACCAGGAGGGGAGGGGGATCTGGGCCCAGATGAGGTGGTTCACCTGGTTAACCAGGGCCTGAGGGAGGGGGAGAGGGCCTTCAATATCAAAGCCAGGTCCATTCTATGCTGCATGCGCCACATGCCAAACTGGTCCATGGATATTGTGGAGCTGTGTAAGAAGTATCAGCATGAGGGCGTGGTGGCCATCGATCTGGAAGGTGAAGAATCGCTCAGCAGTGAAGCCAACCCCTGA] [+] EMBL BU806270 [GGATCACCGGCATCCACAGGACCCGCACGATGGCCGAGCTCCCCCCGGTAGAGTGGTGTTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATGAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTTCTAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTTGTTGAGGACAGAGCCAAGGAGGGTGTGATTTATGTGGAGGCCAGGTACAGTCCACACTTCCTGGCAAACACGAAGGTGGATCCTATACCATGGAACCAGAA GGAAGGTGATCTGAGCCCAGATGAGGTGGTTCACCTGGTTAACCAGGGCCTGAGGGAGGGGGAGAGGGCCTTCAATATCAAAGCCAGGTCCATTCTATGCTGCATGCGCCACATGCCAAACTGGTCCATGGATATTGTGGAGCTGTGTAAGAAGTATCAGCATGAGGGCGTGGTGGCCATCGATCTGGAAGGTGAAGAATCGCTCAGCAGTGAAGCCAACCCCTGA] [+] EMBL FR0060041 [ CCGGTAGAGTGGTGTTCAACCGGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATGAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTCCGAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTTG ] [+] EMBL FR0059652 [ TCAACCAGCCCAAGGGTGAGCTGCACTTTCACCTCGATGTATCCATCCCCCTCCACACCATCNTCGACGTGGCCAAGATACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATCAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGGTCCTGGGCGAGTTCTTCGAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATTAAGAGGATAGCGTATGAATTTGTTGAGGACAGAGCCAAGGGGGGGGTGATTTATGTGGGGGCCAGGGACAGTCCACACTTTCTGGCAGACACGAAGGGGGTTCCTGTACCATGGAACCAGGAGGGGAGGGGGTTCTGGGC ] [+] EMBL FR0059114 [ CAGCCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATGAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTCCGAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTTGTTGAGGACAGAGCCAAGGAGGGTGTGATTTATGTGGAGGCCAGGTACAGTCCACACTTCCTGGCAAACACGAAGGTGGATCCTATACCATGGAACCA ] consensusID : consensus_2340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [TCCACAGGACCCGCACGATGGCCGAGCTCCCCCCCCGGTAGAGTGGTGTTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGTAAGGGGGCTCTATTTTTGTAGTGGGTCTAAATGTTGGAGACAGGGAGTGCCGGGGAGTGTCGTCTTTTTTCCAAGACATCCCAGCAATGGCTTTTATCCGAGCCCCAACGCTGACGTGCTGGGCATCAGATGCTGGAATGTTGGGAAGTGCTGCCTTAAAACAAGGATAACAGCACAAATCTTCACTAAAACTTTAGTTTTATTCCGTTTTATCACCTGTGTGGATAATTAGCGGGGACCCTTGGAGAGGAGCCAGCCAGCACTTAGAAGGCAGAACTCACGTCAGGACCAAGGTTCAGCGGTCAGGAGACAATAATGGAGCGTTTTTACCACTCAGTTAAGCCCACATTTGCATCGCTGCCCGGCCTGATAATGACTCATATCAGCTGATATTTACAGCGA] [+] EMBL BU805476 [TCCACAGGACCCGCACGATGGCCGAGCTCCCCCCCCGGTAGAGTGGTGTTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGTAAGGGGGCTCTATTTTTGTAGTGGGTCTAAATGTTGGAGACAGGGAGTGCCGGGGAGTGTCGTCTTTTTTCCAAGACATCCCAGCAATGGCTTTTATCCGAGCCCCAACGCTGACGTGCTGGGCATCAGATGCTGGAATGTTGGGAAGTGCTGCCTTAAAACAAGGATAACAGCACAAATCTTCACTAAAACTTTAGTTTTATTCCGTTTTATCACCTGTGTGGATAATTAGCGGGGACCCTTGGAGAGGAGCCAGCCAGCACTTAGAAGGCAGAACTCACGTCAGGACCAAGGTTCAGCGGTCAGGAGACAATAATGGAGCGTTTTTACCACTCAGTTAAGCCCACATTTGCATCGCTGCCCGGCCTGATAATGACTCATATCAGCTGATATTTACAGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2340#0 GGATCACCGGCATCCACAGGACCCGCACGATGGCCGAGCTCCCCCC--GGTAGAGTGGTG 58 consensus_2340#1 ------------TCCACAGGACCCGCACGATGGCCGAGCTCCCCCCCCGGTAGAGTGGTG 48 ********************************** ************ consensus_2340#0 TTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACC 118 consensus_2340#1 TTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACC 108 ************************************************************ consensus_2340#0 ATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATG 178 consensus_2340#1 ATCGTCGACGTGGCCAAGTAAGGGGGCTCTATTTTTGTAGTGGGTCTAAATGTTGGAGAC 168 ****************** * * *** * * ** * * ** consensus_2340#0 AAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTCC 238 consensus_2340#1 AGGGAGTGC------CGGGGAGTGTCGTCTTTTTTCCAAGACATCCCAGCAATGGCTTT- 221 * * ** * * * * * * ** ** *** * * * * consensus_2340#0 GAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTT 298 consensus_2340#1 ---TATCCGAGCCCCAACGCTGACG--TGCTGGGCATCAGATGCTGGAATGTTGGGAAGT 276 ** * * * ** * * * **** * * * ** * * * consensus_2340#0 GTTGAGGACAGAGCCAAGGAGGGTGTGATTTATGTGGAGGCCAGGTACAGTCCACACTTC 358 consensus_2340#1 GCTGC--CTTAAAACAAGGATAACAGCACAAATCTTCACTAAAACTTTAGTTTT--ATTC 332 * ** * ****** * ** * * * * *** *** consensus_2340#0 CTGGCAAACACGAAGGTGGATCCTATACCATGGAACCAGGAGGGGAGGGGGATCTGGGCC 418 consensus_2340#1 CGTTTTATCACCTGTGTGGATAAT-TAGCGGGGACCCTTGGAGAGGAGCCAGCCAGCACT 391 * * *** ****** * ** * *** ** * * * * * * * consensus_2340#0 CAGATGAGGTGGTTCACCTGGTTAACCAGGGCCTGAGGGAGGGGGAGAGGGCCTTCAATA 478 consensus_2340#1 TAGAAGGCAGAACTCACGTCAGGACCAAGGTTCAGCGGTCAGGAGACAATAA-TGGAGCG 450 *** * **** * * * *** * * ** ** ** * * * consensus_2340#0 TCAAAGCCAGGTCCATTCTATGCTGCATGCGCCACA-TGCCAAACTGGTCCATGGATATT 537 consensus_2340#1 TTTTTACCA--CTCAGTTAAGCCCACATTTGCATCGCTGCCCGGCCTGATAATGACTCAT 508 * *** ** * * * *** ** * **** * * *** * * consensus_2340#0 GTGGAGCTGTGTAAGAAGTATCAGCATGAGGGCGTGGTGGCCATCGATCTGGAAGGTGAA 597 consensus_2340#1 ATCAGCTGATATTTACAGCGA--------------------------------------- 529 * * * ** consensus_2340#0 GAATCGCTCAGCAGTGAAGCCAACCCCTGA 627 consensus_2340#1 ------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |