cluster # 2350

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 2350 cluster # 2350 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2350#0 length = 612 sequences # 4

consensus_2350#1 length = 586 sequences # 1

consensusID : consensus_2350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 612
fasta sequence

                              [TGCGGCTGTGGTTGTTCTATCGTCCTCTAACTGGGTGGAAAATGGCAGATACATTGACACTTTTCACATCCATCGGCCTCAGGGAGCAGAAAGCGAAAGAAACTCTAAAAAATGAGAGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACCAAAAGCAGTTTGACGAAGCTTGTGGAGTCGGCGTTGTAGTTACACCCGAACAGATTGAAAATGCCGTGGAGGCGGTTATCCAGAAGCACAAAGAGCAGCTTTTAAAGGAGAGAAATCGCTTTAACATGGGATTGTTGATGGGTGAGGCCCGCACTGTCCTAAAATGGGCTGATGGAAAAGCCATCAAAAATGAAGTGGATATGCAGGTCCTCCACCTCTTGGGACCTAAGACAGAGGGTGACCTAGAGAAAAATCCAAGAAAG]

[+] EMBL CA591300             [TGCGGCTGTGGTTGTTCTATCGTCCTCTAACTGGGTGGAAAATGGCAGATACATTGACACTTTTCACATCCATCGGCCTCAGTGAGCAGAAAGCGAAAGAAACTCTAAAAAATGA AGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACCAAAAGCAGTTTGACGAAGCTTGTGGAGTCGGCGTTGTAGTTACACCCGAACAGATTGAAAATGCCGTGGAGGCGGTTATCCAGAAGCACAAAGAGCAGCTTTTAAAGGAGAGAAATCGCTTTAACATGGGATTGTTGATGGGTGAGGCCCGCACTGTCCTAAAATGGGCTGATGGAAAAGCCATCAAAAATGAAGTGGATATGCAGGTCCTCCACCTCTTGGGACCTAAGACAGAGGGTGACCTAGAGAAAAATCCAAGAAAG]
[+] EMBL CA590218             [            TGTTCTATCGTCCTCTAACTGGGTGGAAAATGGCAGATACATTGACACTTTTCACATCCATCGGCCTCAGTGAGCAGAAAGCGAAAGAAACTCTAAAAAATGA AGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACTAAAAGCAGTTTGACGAAGCTTGTGGAGTCGGCGTTGTAGTTACACCCGAACAGATTGAAAATGCCGTGGAGGCGGTTATCCAGAAGCACAAAGAGCAGCTTTTAAAGGAGAGATATCGCTTTAACATGGGATTGTTGATGGGTGAGGCCCGCACTGTCCTAAAATGGGCTGATGGAAAAGCCATCAAAAATGAAGTGGATATGCAGGTCCTCCACCTCTTGGGACCTAAGACAGAGGGTGACCTAGAGAAAAATCCAAGAAAG]
[+] EMBL FR0058049            [                                                                             CTCAGGGAGCAGAAAGCGAAAGAAACTCTAAAAAATGAGAGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACCAAAAG                                                                                                                                                                                                                                                                  ]
[+] EMBL FR0058245            [                                                                             CTCAGGGAGCAGAAAGCGAAAGAAACTCTAAAAAATGAGAGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACCAAAAG                                                                                                                                                                                                                                                                  ]




>consensus_2350#0
TGCGGCTGTGGTTGTTCTATCGTCCTCTAACTGGGTGGAAAATGGCAGATACATTGACAC
TTTTCACATCCATCGGCCTCAGGGAGCAGAAAGCGAAAGAAACTCTAAAAAATGAGAGCG
CTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGA
GTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAA
CGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTC
TCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACCAAAAGCAGTTT
GACGAAGCTTGTGGAGTCGGCGTTGTAGTTACACCCGAACAGATTGAAAATGCCGTGGAG
GCGGTTATCCAGAAGCACAAAGAGCAGCTTTTAAAGGAGAGAAATCGCTTTAACATGGGA
TTGTTGATGGGTGAGGCCCGCACTGTCCTAAAATGGGCTGATGGAAAAGCCATCAAAAAT
GAAGTGGATATGCAGGTCCTCCACCTCTTGGGACCTAAGACAGAGGGTGACCTAGAGAAA
AATCCAAGAAAG

consensusID : consensus_2350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [GGGACCTAAGACAGAGGGTGACCTAGAGAAAAAATCCAAGAAAGCTAAAGGTGATGAAAATGTAGCAAAGAAGGAGGCCACTGCCACGAATGGTCTGGAGGTGGAAGCTGAAGGAAAGTCCCTGATGGACCAACTCAGGGGAGAGGCACTTAAGTTCCACAAACCGGGGGAGAACTTTAAAACTGAAGGCTATGTGGTCACACCAAAAACAATGGAGATGCTGAAAAAGCATCTGGACGAAACCGGTGGACAGATCCGTACTCGTTTTCCTCCTGAGCCAAACGGCATCCTTCACATCGGGCATGCCAAAGCTATCAACTTCAACTTTGGCTACGCTAAAGCAAACAATGGAATTTGTTTCTTGAGATATGATGACACAAATCCAGAGAAAGAAGAGGAGAAGTACTTCACTGCGATCAAGGAGATGGTGGAATGGCTTGGCTACACACCGTACGCTGTCACGCATGCATCGGATCACTTCCAGAAACTGTATGACCTTGCTATGGACCTCATCCGAAGGGGTCATGCGTACGTGTGTCACCAGAAAGTGGACGAACTGAAGGGACATAATATTGCCCAGTCGCCC]

[+] EMBL BU807999             [GGGACCTAAGACAGAGGGTGACCTAGAGAAAAAATCCAAGAAAGCTAAAGGTGATGAAAATGTAGCAAAGAAGGAGGCCACTGCCACGAATGGTCTGGAGGTGGAAGCTGAAGGAAAGTCCCTGATGGACCAACTCAGGGGAGAGGCACTTAAGTTCCACAAACCGGGGGAGAACTTTAAAACTGAAGGCTATGTGGTCACACCAAAAACAATGGAGATGCTGAAAAAGCATCTGGACGAAACCGGTGGACAGATCCGTACTCGTTTTCCTCCTGAGCCAAACGGCATCCTTCACATCGGGCATGCCAAAGCTATCAACTTCAACTTTGGCTACGCTAAAGCAAACAATGGAATTTGTTTCTTGAGATATGATGACACAAATCCAGAGAAAGAAGAGGAGAAGTACTTCACTGCGATCAAGGAGATGGTGGAATGGCTTGGCTACACACCGTACGCTGTCACGCATGCATCGGATCACTTCCAGAAACTGTATGACCTTGCTATGGACCTCATCCGAAGGGGTCATGCGTACGTGTGTCACCAGAAAGTGGACGAACTGAAGGGACATAATATTGCCCAGTCGCCC]




>consensus_2350#1
GGGACCTAAGACAGAGGGTGACCTAGAGAAAAAATCCAAGAAAGCTAAAGGTGATGAAAA
TGTAGCAAAGAAGGAGGCCACTGCCACGAATGGTCTGGAGGTGGAAGCTGAAGGAAAGTC
CCTGATGGACCAACTCAGGGGAGAGGCACTTAAGTTCCACAAACCGGGGGAGAACTTTAA
AACTGAAGGCTATGTGGTCACACCAAAAACAATGGAGATGCTGAAAAAGCATCTGGACGA
AACCGGTGGACAGATCCGTACTCGTTTTCCTCCTGAGCCAAACGGCATCCTTCACATCGG
GCATGCCAAAGCTATCAACTTCAACTTTGGCTACGCTAAAGCAAACAATGGAATTTGTTT
CTTGAGATATGATGACACAAATCCAGAGAAAGAAGAGGAGAAGTACTTCACTGCGATCAA
GGAGATGGTGGAATGGCTTGGCTACACACCGTACGCTGTCACGCATGCATCGGATCACTT
CCAGAAACTGTATGACCTTGCTATGGACCTCATCCGAAGGGGTCATGCGTACGTGTGTCA
CCAGAAAGTGGACGAACTGAAGGGACATAATATTGCCCAGTCGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2350#0      TGCGGCTGTGGTTGTTCTATCGTCCTCTAACTGGGTGGAAAATGGCAGATACATTGACAC 60
consensus_2350#1      --------GGGACCTAAGACAGAGGGTGACCTAGAGAAAAAATCCAAGAAAGCTAAAGGT 52
                               **   *   *  *      * ** *    *****   *** *  *  *   

consensus_2350#0      TTTTCACATCCATCGGCCTCAGGGAGCAGAAAGCGAAAGAAACTCTAAAAAATGAGAGCG 120
consensus_2350#1      GATGAAAATGTAGCAAAG--AAGGAGGCCACTGCCACGAATGGTCTGGAGG-TGGAAGC- 108
                        *  * **  * *      * ****   *  ** *   *   ***  *   **  *** 

consensus_2350#0      CTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGA 180
consensus_2350#1      TGAAGGAAAGTCCCTGATGGACCAA---CTCAGGGG-AGAGGCACTTAAGTTCCACAAAC 164
                         **   *   * * * * * ***   ******   ** *   **   * **  **   

consensus_2350#0      GTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAA 240
consensus_2350#1      CGGGGGAGAACTTTAAA------ACTGAAGGCTATGTGGTCACACCAAAAACAATGGAGA 218
                        **  * * *   *        **** *  *****  *** * **  *** *  * * *

consensus_2350#0      CGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTC 300
consensus_2350#1      TGCTGAAAAAGCATCT-GGACGA---AACCGGTGGACAGATCCGTACTCGTTTTCCTC-C 273
                       ***    *  * ***  ***     * *     ** * *** * **       *  * *

consensus_2350#0      TCAGCTGCACTGGACTTTGTG-AGGGATCATCCTCAGGATCCCATTAACCAAAAGCAGTT 359
consensus_2350#1      TGAGCCAAACGGCATCCTTCACATCGGGCATGCCAAAG---CTATCAACTTCAAC---TT 327
                      * ***   ** * *   *    *  *  *** *  * *   * ** ***   **    **

consensus_2350#0      TGACGAAGCTTGTGGAGTCGGCGTTGTAGTTACACCCGAACAGATTGAAAATGCCGTGGA 419
consensus_2350#1      TGGCTACGCTAAAGCAAACAATGGAATTTGTTTCTTGAGATATGATGACACAAATCCAGA 387
                      ** * * ***   * *  *   *   *   *        * *   *** *        **

consensus_2350#0      GGCGGTTATCCAGAAGCACAA-AGAGCAGCTTTTAAAGGAGAGAAATCGCTTTAACATGG 478
consensus_2350#1      GAAAGAAGAGGAGAAGTACTTCACTGCGATCAAGGAGATGGTGGAATGGCTTGGCTACAC 447
                      *   *      ***** **   *  **        *    * * *** ****    *   

consensus_2350#0      GATTGTTGATGGGTGAGGCCCGCACTGTCCTAAAATGGGCTGATGGAAAAGCCATCAAAA 538
consensus_2350#1      ACCGTACGCTG--TCACGCATGCATCGGATCACTTCCAGAAACTGTATGACCTTGCTA-- 503
                             * **  * * **  ***  *    *      *    ** *  * *   * *  

consensus_2350#0      ATGAAGTGGATATGCAGGTCCTCCACCT-CTTGGGACCTAAGACAGAGGGTGACCTAGAG 597
consensus_2350#1      -TGGACCTCATCCGAAGGGGTCATGCGTACGTGTGTCACCAGAAAGTGGACGAACTGAAG 562
                       ** *    **  * ***       * * * ** * *   *** ** **  ** **  **

consensus_2350#0      AAAAATCCAAGAAAG----------- 612
consensus_2350#1      GGACAT--AATATTGCCCAGTCGCCC 586
                        * **  ** *  *

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)