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Takifugu rubripes
cluster # 2353 cluster # 2353       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2353#0 length = 601 sequences # 4  
 consensus_2353#1 length = 501 sequences # 1  
consensusID : consensus_2353#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 601
fasta sequence 
                              [TCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATA-ATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATCTTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTGGTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCTGATGTGCTTCGCGGCCGGACTT]

[+] EMBL BU805583             [TCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATTAGATCAATTAGAAAACCTACGGTCATA ATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCGGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATCTTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTGGTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCTGATG                  ]
[+] EMBL FR0063529            [           CGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATAGATCATCGCCACCCCCCCTCCC TTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATG                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BU805527             [              CAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATA ATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGGTCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCCTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATCTTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTGGTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCTGATGTGCTTCGCGGCCGGACTT]
[+] EMBL BU805540             [              CAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATA ATCATCGCCATCCCCCCTCCCTTTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATCTTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTGGTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCT                      ]




>consensus_2353#0
TCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGT
CATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCC
AGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGC
TCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGC
CGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAG
TGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGT
GATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTT
TGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATCTTTGGTCTGTATGG
CGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTGGTCCTGTCCCACTG
CATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCTGATGTGCTTCGCGGCCGGACT
T

consensusID : consensus_2353#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence 
                              [TCCTCACTGGTTCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGACGGGTGTAGATGGACGTGAGCACAGATCCTTCATC]

[+] EMBL BU805250             [TCCTCACTGGTTCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGACGGGTGTAGATGGACGTGAGCACAGATCCTTCATC]




>consensus_2353#1
TCCTCACTGGTTCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGA
AAACCTACGGTCATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGTTGCTTTTAA
ATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATG
GGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTG
GCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAA
GCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCA
GACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCC
GGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGACGGGTGTAGATGGA
CGTGAGCACAGATCCTTCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2353#0      -----------TCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGA 49
consensus_2353#1      TCCTCACTGGTTCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGA 60
                                 *************************************************

consensus_2353#0      AAACCTACGGTCATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTG---CTTTTAA 106
consensus_2353#1      AAACCTACGGTCATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGTTGCTTTTAA 120
                      **************************************************   *******

consensus_2353#0      ATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATG 166
consensus_2353#1      ATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATG 180
                      ************************************************************

consensus_2353#0      GGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTG 226
consensus_2353#1      GGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTG 240
                      ************************************************************

consensus_2353#0      GCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAA 286
consensus_2353#1      GCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAA 300
                      ************************************************************

consensus_2353#0      GCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCA 346
consensus_2353#1      GCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCA 360
                      ************************************************************

consensus_2353#0      GACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCC 406
consensus_2353#1      GACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCC 420
                      ************************************************************

consensus_2353#0      GGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATC 466
consensus_2353#1      GGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAG-ACGGGTG--TAGAT 477
                      ********************************************* ** * *   *    

consensus_2353#0      TTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTG 526
consensus_2353#1      GGACGTGAGCACAGATCCTTCATC------------------------------------ 501
                          **  * *  *    **   *                                    

consensus_2353#0      GTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCTGATGTGC 586
consensus_2353#1      ------------------------------------------------------------
                                                                                  

consensus_2353#0      TTCGCGGCCGGACTT 601
consensus_2353#1      ---------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)