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Takifugu rubripes
cluster # 2356 cluster # 2356       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2356#0 length = 709 sequences # 2  
consensus_2356#1 length = 628 sequences # 3  

consensusID : consensus_2356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 709
fasta sequence
                              [TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACTGTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGCTCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTGTTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCCAACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGTGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCTGACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG]

[+] EMBL CA846040             [TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTC GGTAACTGTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGCTCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTGTTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCCAACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGTGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCTGACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG]
[+] EMBL FR0059082            [                                                                    CAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACTGTCTGAAGTAG                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_2356#0 TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAA GGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTAC AGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAG AAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGC AGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACA AAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACT GTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGC TCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTG TTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCC AACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGG TGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCT GACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG



consensusID : consensus_2356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 628
fasta sequence
                              [TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGA]

[+] EMBL CA589551             [TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCT           ]
[+] EMBL BU805858             [              AGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGA]
[+] EMBL CA847072             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGACCTAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAG ]


>consensus_2356#1 TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGT TGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGC AGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAG ACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGC TGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAG AGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCAT CCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACA AGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTG ATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACA AGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCT CTGATAGTTCCTCTTCTGACAGTGAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2356#0      TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAA 60
consensus_2356#1      ---TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAA 57
                         * ****** *********************************** *  *********

consensus_2356#0      GGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTAC 120
consensus_2356#1      GGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTAC 117
                      ************************************************************

consensus_2356#0      AGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAG 180
consensus_2356#1      AGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAG 177
                      ************************************************************

consensus_2356#0      AAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGC 240
consensus_2356#1      AAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGC 237
                      ************************************************************

consensus_2356#0      AGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACA 300
consensus_2356#1      AGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACA 297
                      ************************************* **********************

consensus_2356#0      AAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACT 360
consensus_2356#1      AAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAG------ACTCAGGTTCCT 351
                      ******************************************       *** **   **

consensus_2356#0      GTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGC 420
consensus_2356#1      C----------CTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCT 401
                                 ** * **    ***    *** ***         **  ***   * *  

consensus_2356#0      TCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTG 480
consensus_2356#1      TCTGAAGATA----AAAA-----GGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAG 452
                      ** *     *    ****      * **** ** *   ***  * ** **   **    *

consensus_2356#0      TTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCC 540
consensus_2356#1      AAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGA----TAGTTCCTC--TTCT 506
                         ** ****        *      ***   * *   ****    ** *  ***  *** 

consensus_2356#0      AACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGG 600
consensus_2356#1      GACAG---TGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAG 563
                       ****   * * * *          *         *        **     ***  ** *

consensus_2356#0      TGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCT 660
consensus_2356#1      AAGAAGAAGGATTCATCTTCTTCATGC--GATAGTTCCTCTGATAGT----TCCTCTTCT 617
                              *  *         * ****   **  **   ***  * *    ** *  ***

consensus_2356#0      GACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG 709
consensus_2356#1      GACA-GTGAAGA------------------------------------- 628
                      ***  *     *                                     




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)