These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence [TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACTGTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGCTCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTGTTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCCAACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGTGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCTGACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG] [+] EMBL CA846040 [TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTC GGTAACTGTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGCTCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTGTTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCCAACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGTGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCTGACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG] [+] EMBL FR0059082 [ CAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACTGTCTGAAGTAG ] consensusID : consensus_2356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 628 fasta sequence [TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGA] [+] EMBL CA589551 [TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCT ] [+] EMBL BU805858 [ AGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGA] [+] EMBL CA847072 [ AGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGACCTAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2356#0 TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAA 60 consensus_2356#1 ---TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAA 57 * ****** *********************************** * ********* consensus_2356#0 GGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTAC 120 consensus_2356#1 GGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTAC 117 ************************************************************ consensus_2356#0 AGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAG 180 consensus_2356#1 AGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAG 177 ************************************************************ consensus_2356#0 AAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGC 240 consensus_2356#1 AAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGC 237 ************************************************************ consensus_2356#0 AGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACA 300 consensus_2356#1 AGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACA 297 ************************************* ********************** consensus_2356#0 AAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACT 360 consensus_2356#1 AAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAG------ACTCAGGTTCCT 351 ****************************************** *** ** ** consensus_2356#0 GTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGC 420 consensus_2356#1 C----------CTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCT 401 ** * ** *** *** *** ** *** * * consensus_2356#0 TCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTG 480 consensus_2356#1 TCTGAAGATA----AAAA-----GGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAG 452 ** * * **** * **** ** * *** * ** ** ** * consensus_2356#0 TTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCC 540 consensus_2356#1 AAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGA----TAGTTCCTC--TTCT 506 ** **** * *** * * **** ** * *** *** consensus_2356#0 AACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGG 600 consensus_2356#1 GACAG---TGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAG 563 **** * * * * * * ** *** ** * consensus_2356#0 TGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCT 660 consensus_2356#1 AAGAAGAAGGATTCATCTTCTTCATGC--GATAGTTCCTCTGATAGT----TCCTCTTCT 617 * * * **** ** ** *** * * ** * *** consensus_2356#0 GACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG 709 consensus_2356#1 GACA-GTGAAGA------------------------------------- 628 *** * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |