These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence [CTCACACTGAAAACTTCAGCATCACCATGTTGTCAATAATTCTGACTGTCATCTTTCTGAGTCAGGAATCTTCTGGCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGAGCATCAGCGCCACAGGAAGCTCAGATATTGGCGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATGCTGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTCAGTACACTCTAACCATCGCTGGTGTTCAGGCTGAAGATGAAGGGGATTATTACTGTCTGGGCGAACATGGCGACGGAACGTACACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTGGAAGCTGAGCTGGAAGGTGGGGGGCAGCAGCAGCACCACACCGGCCTCACACAGCCTGGAGGTCCTGGGGAGTGACGGCCGCTTCAGCTGGAGCAGCACC] [+] EMBL BU807888 [CTCACACTGAAAACTTCAGCATCACCATGTTGTCAATAATTCTGACTGTCATCTTTCTGAGTCAGGAATCTTCTGGCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGAGCATCAGCGCCACAGGAAGCTCAGATATTGGCGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATTCTGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGCTCTGGTTCTCAGTACACTCTAACCATCGCTGGTGTTCAGGCTGAAGATGCTGGGGATTATTACTGTCTGGGTGCACATGGTGATGGAACATTCACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTGGAAGCTGAGCTGGAAGGTGGGGGGCAGCAGCAGCACCACACCGGCCTCACACAGCCTGGAGGTCCTGGGGAGTGACGGCCGCTTCAGCTGGAGCAGCACC] [+] EMBL FR0055184 [ ACCATGTTGTCAATAATTCTGACTGTCATCTTTCTGAGTCAGGAATCTTCTGCCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGACCATCAGCGCCACAGGAAGCTCAAATATTAACAATGCTCTTTACTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATGCTGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTCAGTACACTCTAACCATCACTGGTGTTCAGGCTGAAGATGAAGCAGATTATTACTGTCTGGGCTACCATTACGACGGAACGTACACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGAGGCTCCCCCTCACAGTGGAAGCTGAGCTGGAAGGTGGGGGGCAGCAGCAGCACCACACCGGCCTCACACAGCCTGGAGGTCCTGGGGAGTGACGGCCG ] consensusID : consensus_2376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 526 fasta sequence [GCATGACTCTCATCACCATCCTCATCTGGACGCTGACCTGCTGCTCTTTTACAGGATGCAGCGGTCAGGTGACTGTGACTCAGCCTGCAGTGATCACATCTACTCCAGGATCCACTGTCGCTCTCACCTGTAAAACAAACCCTGCTGTTTACAGCAGCTGTCATAATGGACAATCAACTAGTGATTGTATGGGCTGGTATCAACAGAAACCTGGACAGCCTCCACAGCTGCTAGTAAGACATGTCAGAATAAATCATTCAGGAACAGCAGCTCGGTTTAGTGGCAGTGGCAGCAGCACCGACTTCACTTTGACCATCAGTGGAGTTCAGACTCAAGATGAAGCAGTTTATTACTGTCAGAGTCATCACAGTGGGGGAGTGTACACGTTTGGTGGGGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCAACCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTG] [+] EMBL CA330233 [GCATGACTCTCATCACCATCCTCATCTGGACGCTGACCTGCTGCTCTTTTACAGGATGCAGCGGTCAGGTGACTGTGACTCAGCCTGCAGTGATCACATCTACTCCAGGATCCACTGTCGCTCTCACCTGTAAAACAAACCCTGCTGTTTACAGCCGCTGTCATAATGGACAATCAACTAGTGATTGTATGTTCTGGTATCAACAGAAACCTGGACAGCCTCCACAGCTGCTAGTAAGACATGTCAGAATAAATCATTCAGGAACAGCAGCTCGGTTTAGTGGCAGTGGCAGCAGCACCGACTTCACTTTGACCATCAGTGGAGTTCAGACTCAAGATGAAGCAGTTTATTACTGTCAGAGTTATCACAGTGGGGACGTGTTCACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCAGTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTG] [+] EMBL FR0056003 [ CGCTGACCTGCTGCTCTTTTACAGGATGCAGCGGTCAGGTGACTGTGACTCAGCCTGCAGTGATCACATCTACTCCAGGATCCACTGTCGCTCTCACCTGTAAAACAAACCCTGCTGTTTACAGCAGCTGTTATAATGGACAATCAACTAGTGATTGTTTGGGCTGGTATCAACAGAAACCTGGACAGCCTCCACAGCTGCTAGTAAGACATGTCAGAATAAATCATTCAGGAACAGCAGCTCGGTTTAGTGGCAGTGGCAGCAGCACCGACTTCACTTTGACCATCAGTGGAGTTCAGACTCAAGATGAAGCAGTTTATTACTGTCAGAGTCATCACAGTGGAGGAGTGTACACGTTTGGTGGGGGAACCAAACTCATCGTTGACTCGGGTGTGGTGCGTCCCAACCTGACCGTC ] consensusID : consensus_2376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [AGCACTAACTCAAGAGTTGGGGCATGTGAAGAATCTTCTGCCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGACCATCAGCGCCACAGGAAGCTCAGATATTGACGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATAAAGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTCAGTACACTCTAACCATCACTGGTGTTCAGGCTGAAGATGAAGCAGATTATTACTGTCTGGGCTACCATAGCGACTATACATTCACACAGTGATTTAGAGCCGTACAAAAACCTCCCTCAGTGTGA] [+] EMBL FR0060043 [AGCACTAACTCAAGAGTTGGGGCATGTGAAGAATCTTCTGCCAACAACTTTCTGACTCAGGCTGATAAATTCAAGTCTGTTAGTGTTGGAGGGTCTGTGACCATCAGCGCCACAGGAAGCTCAGATATTGACGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATAAAGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTCAGTACACTCTAACCATCACTGGTGTTCAGGCTGAAGATGAAGCAGATTATTACTGTCTGGGCTACCATAGCGACTATACATTCACACAGTGATTTAGAGCCGTACAAAAACCTCCCTCAGTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2376#0 --------CTCACACTGAAAACTTCAGCATCACCATGTTGTCAATAATTCTGACTGTCAT 52 consensus_2376#2 ---------------------------------------AGCACTAACTCAAGA----GT 17 consensus_2376#1 GCATGACTCTCATCACCATCCTCATCTGGACGCTGACCTGCTGCTCTTTTACAGGATGCA 60 * * consensus_2376#0 CTTTCTGAGTCAGGAATCTTCTGGCAACAACTTTCTGACTCAGGCT--GATAAATT--CA 108 consensus_2376#2 TGGGGCATGTGAAGAATCTTCTGCCAACAACTTTCTGACTCAGGCT--GATAAATT--CA 73 consensus_2376#1 GCGGTCAGGTGACTGTGACTCAGCCTGCAGTGATCACATCTACTCCAGGATCCACTGTCG 120 ** * ** * * ** ** * * * *** * * * consensus_2376#0 AGTCTGTTAGTGTTGGAGGGTCTGTGAGCATCAGCGCCA--CAGGAAGCTCAGATA-TTG 165 consensus_2376#2 AGTCTGTTAGTGTTGGAGGGTCTGTGACCATCAGCGCCA--CAGGAAGCTCAGATA-TTG 130 consensus_2376#1 CTCTCACCTGTAAAACAAACCCTGCTGTTTACAGCAGCTGTCATAATGGACAATCAACTA 180 ** * *** **** * ** * * ** * * consensus_2376#0 GCGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATG 225 consensus_2376#2 ACGATGATCTCAGCTGGTACCTTCAGAAACCTGGACAGGCTCCTAAACTTCTGATATATA 190 consensus_2376#1 GTGATTGTATGGGCTGGTATCAACAGAAACCTGGACAGCCTCCACAGCTGCTAGTAAGAC 240 *** * * ******* * *************** **** * ** ** ** consensus_2376#0 CTGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTC 285 consensus_2376#2 AAGTATCAAGTCTCTACACAGGAACGCCGTCTCGATTCAGTGGCAGCAGATCTGGTTCTC 250 consensus_2376#1 ATGTCAGAATAAATCATTCAGGAACAGCAGCTCGGTTTAGTGGCAGTGGCAGCAGCACCG 300 ** ** * ******* * **** ** ******** * * * consensus_2376#0 AGTACACTCTAACCATCGCTGGTGTTCAGGCTGAAGATGAAGGGGATTATTACTGTCTGG 345 consensus_2376#2 AGTACACTCTAACCATCACTGGTGTTCAGGCTGAAGATGAAGCAGATTATTACTGTCTGG 310 consensus_2376#1 ACTTCACTTTGACCATCAGTGGAGTTCAGACTCAAGATGAAGCAGTTTATTACTGTCAGA 360 * * **** * ****** *** ****** ** ********* * *********** * consensus_2376#0 GCGAACATGGCGACGGAACGTACACGTTTGGTGGAGGAACCAAACTCATCGTTGACTCGG 405 consensus_2376#2 GCTACCATAGCGACTATACATTCACACAGTGATTTAGAGCCGTACAAAAACCTCCCTCAG 370 consensus_2376#1 GTCATCACAGTGGGGGAGTGTACACGTTTGGTGGGGGAACCAAACTCATCGTTGACTCGG 420 * * ** * * * *** * ** ** ** * * *** * consensus_2376#0 GTGTGGTGCGTCCCACCCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCA 465 consensus_2376#2 -TGTGA------------------------------------------------------ 375 consensus_2376#1 GTGTGGTGCGTCCCAACCTGACCGTCCTCCCCCCCTCCCCAGAGGAGCTGCAGCAGGGCA 480 **** consensus_2376#0 GTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTGGAAGCTGAGCTGGA 525 consensus_2376#2 ------------------------------------------------------------ consensus_2376#1 GTGCCACACTGGTGTGTCTGGCCAGCGGGGGCTCCCCCTCACAGTG-------------- 526 consensus_2376#0 AGGTGGGGGGCAGCAGCAGCACCACACCGGCCTCACACAGCCTGGAGGTCCTGGGGAGTG 585 consensus_2376#2 ------------------------------------------------------------ consensus_2376#1 ------------------------------------------------------------ consensus_2376#0 ACGGCCGCTTCAGCTGGAGCAGCACC 611 consensus_2376#2 -------------------------- consensus_2376#1 -------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |