These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 629 fasta sequence [TGCTAGATAGTTACCGGACAGGCGCAGGAGGGTAAAGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCATGAGTGTCCAGTCGTCGCTGGTCATGCATCCCATCAATGCATACGGCACAGAGGCCCAGAAGGAGAAGTACCTGCCCCGGCTTGCTCGAGGGGAAATCCTGGGCTGCTTTGGCCTGACAGAACCCAACCATGGCAGCGATCCCAGCGGCATGGAGACC] [+] EMBL FR0063101 [TGCTAGATAGTTACCGGACCAGCGCTCCAGTCTACAGGGTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCGAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGGCCGACC ] [+] EMBL BU805349 [ ctACAGGTGCAAAACGGTATATGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGTTTTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCATGAGTGTCCAGTCGTCGCTGGTCATGCATCCCATCAATGCATACGGCACAGAGGCCCAGAAGGAGAAGTACCTGCCCCGGCTTGCTCGAGGGGAAATCCTGGGCTGCTTTGGC ] [+] EMBL CA846642 [ CAGGTGCAAAACGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCATGAGTGTCCAGTCATCGCTGGTCATGCATCCCATCAATGCATACGGCACAGAGGCCCAGAAGGAGAAGTACCTGCCCCGGCTTGCTCGAGGGGAAATCCTGGGCTGCTTTGGCCTGACAGAACCCAACCATGGCAGCGATCCCAGCGGCATGGAGACC] consensusID : consensus_2379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CTCCTTTTGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCAGTCTACAGGTGCAAAACGGTATATGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCAT] [+] EMBL CA845885 [CTCCTTTTGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCAGTCTACAGGTGCAAAACGGTATATGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCAT] consensusID : consensus_2379#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [TGCTCGGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCATTCTACAGGTGCAAAACGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCC] [+] EMBL CA846005 [TGCTCGGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCATTCTACAGGTGCAAAACGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2379#0 --------------TGCTAGATAGTTACCGGAC----------------AGGCGCAGGAG 30 consensus_2379#1 CTCCTTTTGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCAGTCTACAGGTGCAAAAC 60 consensus_2379#2 --TGCTCGGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCATTCTACAGGTGCAAAAC 58 ******************* *** *** * consensus_2379#0 GGTAAAGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAA 90 consensus_2379#1 GGTATATGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAA 120 consensus_2379#2 GGT------TTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAA 112 *** *************************************************** consensus_2379#0 GAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGG 150 consensus_2379#1 GAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAG--- 177 consensus_2379#2 GAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGG 172 ********************************************************* consensus_2379#0 GTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTT 210 consensus_2379#1 ------------------------------CCAAGGTGCCTTTTAACTGGCGGGATGCTT 207 consensus_2379#2 GTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTT 232 ****************************** consensus_2379#0 TGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACT 270 consensus_2379#1 TGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACT 267 consensus_2379#2 TGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACT 292 ************************************************************ consensus_2379#0 ACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACC 330 consensus_2379#1 ACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACC 327 consensus_2379#2 ACTGCCAGGAGAAACTCATGCCC------------------------------------- 315 *********************** consensus_2379#0 GAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATG 390 consensus_2379#1 GAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATG 387 consensus_2379#2 ------------------------------------------------------------ consensus_2379#0 GCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGG 450 consensus_2379#1 GCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGG 447 consensus_2379#2 ------------------------------------------------------------ consensus_2379#0 ACAGCGGCTATCGGTCAGTCATGAGTGTCCAGTCGTCGCTGGTCATGCATCCCATCAATG 510 consensus_2379#1 ACAGCGGCTATCGGTCAGTCAT-------------------------------------- 469 consensus_2379#2 ------------------------------------------------------------ consensus_2379#0 CATACGGCACAGAGGCCCAGAAGGAGAAGTACCTGCCCCGGCTTGCTCGAGGGGAAATCC 570 consensus_2379#1 ------------------------------------------------------------ consensus_2379#2 ------------------------------------------------------------ consensus_2379#0 TGGGCTGCTTTGGCCTGACAGAACCCAACCATGGCAGCGATCCCAGCGGCATGGAGACC 629 consensus_2379#1 ----------------------------------------------------------- consensus_2379#2 ----------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |