These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence [CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACGATCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGACCAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGATCGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGTAAGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTGTCTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGGAGCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAACCTGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATAGGTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCAGAAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA] [+] EMBL FR0056463 [CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACGATCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGACCAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGATCGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGTAAGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTGTCTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTTCCCGACCCACCGAACGGAGCCTGTGACTCCCGCTG ] [+] EMBL CA333377 [ GACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGGAGCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAACCTGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATAGGTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCAGAAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA] consensusID : consensus_2380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGTCCTCAACTACAAGCGACTGGTTTACTTGAACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGCAGGACTAAGCTGTTCAGAACGGCGGTGAAAAATCAAA] [+] EMBL BU807854 [CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGTCCTCAACTACAAGCGACTGGTTTACTTGAACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGCAGGACTAAGCTGTTCAGAACGGCGGTGAAAAATCAAA] consensusID : consensus_2380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGGCCT] [+] EMBL FR0056106 [TCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGGCCT] consensusID : consensus_2380#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [ACACTCGAGCACCACGGTCAACACCACAGACACCGGTCAGGTCCACATCTAGAGGGAGATAAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCACGGCAGCAGGCGGTCCGCCGTGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGGACCGCTGGAGTCCAGAGGAGGACGGGGGA] [+] EMBL FR0063351 [ACACTCGAGCACCACGGTCAACACCACAGACACCGGTCAGGTCCACATCTAGAGGGAGATAAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCACGGCAGCAGGCGGTCCGCCGTGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGGACCGCTGGAGTCCAGAGGAGGACGGGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2380#1 CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGC 60 consensus_2380#2 ------------------------------------------TCGGTGGGAAAGAATAGC 18 consensus_2380#3 ------------------------------------------------------------ consensus_2380#0 -CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACG 59 consensus_2380#1 CCGGGTCC---TCGTGTGCCTCCTGGGCATACTGCTGTCTC-TGTACGCCTT---CCACG 113 consensus_2380#2 CCGGGTCC---TCGTGTGCCTCCTGGGCATACTGCTGTCTC-TGTACGCCTT---CCACG 71 consensus_2380#3 ----ACAC---TCGAGCACCACG-GTCAACACCACAGACAC-CGGTCAGGT----CCACA 47 consensus_2380#0 ATCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGA 119 * * * ** * * * * * * consensus_2380#1 TGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCA 173 consensus_2380#2 TGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCA 131 consensus_2380#3 TCTAGAGGGAGATAAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCA 107 consensus_2380#0 CCAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGA 179 ******* * * * * * consensus_2380#1 TCA----GCTGTTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCT 229 consensus_2380#2 TCA----GCTGTTCTAAAGTGTTCGGCTCCAGGTG----GGGCCGAGGATTTGGACTCTT 183 consensus_2380#3 -CG----GCAGC----AGGCGGTCCGCCGTGGTGG-----GGCCGAGGATTTGGACTCTT 153 consensus_2380#0 TCGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGT 239 * * * * * * * * * * consensus_2380#1 GAT----CCTCATGACCACGTCCATCA----TGTCGGTGGTGG-GCTCGCTCTAC-CTGG 279 consensus_2380#2 GGG----CTCCAT--TTTTGGGAATGA----CAGCG-CACTGA-ACCAACCCAAC-AGCG 230 consensus_2380#3 GGG----CTCCAT--TTTTGGGAATGA----CAGCG-CACTGA-ACCAACCCAAC-AGCG 200 consensus_2380#0 AAGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTG 299 * * * * ** * * ** * consensus_2380#1 GCTAC---ATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACG 336 consensus_2380#2 TCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGG 290 consensus_2380#3 TCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGGACCGCTGGAGTCCAGAGGA 260 consensus_2380#0 TCTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGG 359 ** * * * * consensus_2380#1 CG---CTGAACTTCAT--CCTTTT---TGTCCTCAACTACAAGCGACTGGTT-TACTTGA 387 consensus_2380#2 CGGCCCTGATCCTCATGACCACGT---CCATCATGTCGGTGGTGGGCTCGCTCTACCTGG 347 consensus_2380#3 GGACGGGGGA-------------------------------------------------- 270 consensus_2380#0 AGCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAAC 419 * * consensus_2380#1 ACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGCAGGACTAAGCTGT-TCAGAACGG---- 442 consensus_2380#2 GCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTC--ATCTGCGTCACCACGT---- 401 consensus_2380#3 ------------------------------------------------------------ consensus_2380#0 CTGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATA 479 consensus_2380#1 CGGTGAAAAATCAAA--------------------------------------------- 457 consensus_2380#2 ACGCGCTGAACTTCATCCTTTTTGGCCT-------------------------------- 429 consensus_2380#3 ------------------------------------------------------------ consensus_2380#0 GGTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCA 539 consensus_2380#1 ------------------------------------------------ consensus_2380#2 ------------------------------------------------ consensus_2380#3 ------------------------------------------------ consensus_2380#0 GAAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA 587 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |