These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence [GCACAGCGACATATTGACTCGACTATCTAGTGGAGACCACCCTAATCGCGCGAGGTGTTTTTATGTCTACACTTCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGGGGGCGGAGCGGGTTCGCATTGGGAAGGGACCGAGAAGGATTATTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTAGCTTGGCGGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGGCAAAACTGAACTGTCCCACACACCTGCCAACGGGATGGCTAAGAAATGGCATATGATGCTGAGATGGAGGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAGGTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGAAAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGACAGCATACACTGGAGCCCTCACCGAAGACTACCTG] [+] EMBL CA591406 [GCACAGCGACATATTGACTCGACTATCTAGTGGAGACCACCCTAATCGCCCGACGTCTTTTTATTTCTACACTTCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGGGAGCGGAGCGGGTTCGCATTGGGAAGGGACCGAGAAGGATTATTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAG AATGGCA ATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAGGTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGAAAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGACAGCATACACTGGAGCCCTCACCGAAGACTACCTG] [+] EMBL FR0059974 [ CTCGACTATCTAGTGGAGACCACCCTAATCGCGCG GGTGTTTTTATGTCTACACTTCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGG ] [+] EMBL FR0058661 [ TCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGGGGGCGGAGCGGATTCGCATTGGGAAGGGACCGAGAAGGATTATTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTAGCTTGGCGGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGGCAAAACTGAACTGTCCCACACACCTGCCAACGGGTTGGTTAAGAAATGGCATATGATGCTGAGATGGAGGAAGGCCTGT ] consensusID : consensus_2381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 602 fasta sequence [CCCGCCACCCTGACACACTTTCCAGTGTGCAGGGAGCGGCACTGTTGAGTTATCTTCTCACTTGTTAGGTTTTCGGCTTTTAAACAATCCGATTTTAACACTACAGATCAGGCCGAGTAATATCGGATGTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAGAATGGCAATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAGGTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGAAAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGACAGCATACACTGGAGCCCTCACCGAAGACTACCTGACC] [+] EMBL BU807558 [CCCGCCACCCTGACACACTTTCCAGTGTGCAGTTAACGGCACTGTTGAGTTATCTTCTCACTTGTTAGGTTTTCGGCTTTTAAACAATCCGATTTTAACACTACAGATCAGGCCGAGTAATATCGGATGTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAGAATGGCAATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAGGTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGAAAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGACAGCATACACTGGAGCCCTCACCGAAGACTACCTGACC] [+] EMBL FR0059746 [ CTGACACACTTTCCAGTGTGCAGGGAGCGGCACTGTTGAGTTATCTTCTCACTTGTTAGGTTTTCGGCTTTTAAACAATCCGATTTTAACACTACAGATCAGGCCGAGTAATATCGGATGTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAGAATGGCAATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2381#0 GCACAGCGACATATTGACTCGACTATCTAGTGGAGACCACCCTAATCGCGCGAGGTGTTT 60 consensus_2381#1 ----CCCGCCACCCTGACAC-ACTTTCCAGTG-----TGCAGGGAGCG-GCACTGTTGAG 49 ** ** **** * *** ** **** * * ** ** ** consensus_2381#0 TTATGTCTACACTTCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGG 120 consensus_2381#1 TTATCTTCTCACTTGTTAGGTTTTCGGCTTTTAAACAATCCG---ATTTTAACACTACAG 106 **** * ***** * * * * * * * ** ** * ****** * * consensus_2381#0 GGGCGGAGCGGGTTCGCATTGGGAAGGGACCGAGAAGGATTATTGATGTCCAGCTCGCCG 180 consensus_2381#1 --ATCAGGCCGAGTAATATCGGATG------------------TGATGTCCAGCTCGCCG 146 ** * * ** ** ***************** consensus_2381#0 CTGTCCAAGAAGCGTAGCTTGGCGGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCC 240 consensus_2381#1 CTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCC 206 *************** ***** * ************************************ consensus_2381#0 TCAAACTCTGGCAAAACTGAACTGTCCCACACACCTGCCAACGGGATGGCTAAGAAATGG 300 consensus_2381#1 TCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAGAA-TGG 265 ********** ********* *********************** *********** *** consensus_2381#0 CATATGATGCTGAGATGGAGGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATG 360 consensus_2381#1 CA-ATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATG 324 ** ************* ** **************************************** consensus_2381#0 ATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGG 420 consensus_2381#1 ATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGG 384 ************************************************************ consensus_2381#0 TGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAG 480 consensus_2381#1 TGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAG 444 ************************************************************ consensus_2381#0 GTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGA 540 consensus_2381#1 GTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGA 504 ************************************************************ consensus_2381#0 AAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGA 600 consensus_2381#1 AAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGA 564 ************************************************************ consensus_2381#0 CAGCATACACTGGAGCCCTCACCGAAGACTACCTG--- 635 consensus_2381#1 CAGCATACACTGGAGCCCTCACCGAAGACTACCTGACC 602 *********************************** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |