These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 656 fasta sequence [TGTGCTTGAACAAAACCGGATTCTGCAAACATGCTGGCAGCCAGGTTTCTCCGCCGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACGCCGAGGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGTGTTCTTCCAAGAGGCCAGTGTTAAACAGGTGGACGTGCCCACGCTCACGGGTACTTTCGGCATCCTTCCTGCCCACGTCCCCACCCTGCAGGTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTCGTGAGCAGCGGGTCGGTAACCGTCAACGCGGATTCTTCAGTGCAGCTGCTGGCTGAGGAGGCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGGAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACGT] [+] EMBL FR0055167 [TGTGCTTGAACAAAACCGGATTCTGCAAACATGCTGGCAGCCAGGTTTCTCCGCCGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACGCCGAGGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGTGTTCTTCCAAGAGGCCAGTGTTAAACAGGTGGACGTGCCCACGCTCACGGGTACTTTCGGCATCCTTCCTGCCCACGTCCCCACCCTGCAGGTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTCGTGAGCAGCGGGTCGGTAACCGTCAACGCGGATTCTTCAGTGCAGCTGCTGGCTGAGGAGGCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAATGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGGAA ] [+] EMBL FR0055302 [ GAACAAAACCGGATTCTGCAAACATGCTGGCAGCCAGGTTTCTCCGCCGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACGCCGATGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGTGTTCTTCCAAGAGGCCAGTGTTAAACAGGTGGACGTGCCCACGCTCACGGGTACTTTCGGCATCCTTCCTGCCCACGTCCCCACCCTGCAGGTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTCGTGAGCAGCGGATCGGTAACCGTCAACGCGGCTTCTTCAGTGCAGCTGCTGGCTGAGGAGGCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAAGGCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCG ] [+] EMBL CA330313 [ GGCATCCTTCCTGCCCACGTCCCCACCCTGCAGGTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTCGTGAGCAGCGGGTCGGTAACCGTCAACGCGGATTCTTCAGTGCAGCTGCTGGCTGAGGAGGCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACGT] consensusID : consensus_2384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [CCCCAGCCTGCAATGAAAAGACACACGGACTCACACTGTTAATAAGCAGGAAAAGGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAA] [+] EMBL CA844737 [CCCCAGCCTGCAATGAAAAGACACACGGACTCACACTGTTAATAAGCAGGAAAAGGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAA] consensusID : consensus_2384#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [GACGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACCCTGAGGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGCTCGTGCCGAATTCGGCACGAGCTTTGCGATATCTGTTTAAAAGTTGTACTTGTAACTGATATGTTTTTCAAGTATGTTTTTATTTTTAACTTTTCAAGCAGCTGATAAAGAGATCGATGGAAAGTA] [+] EMBL CA847287 [GACGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACCCTGAGGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGCTCGTGCCGAATTCGGCACGAGCTTTGCGATATCTGTTTAAAAGTTGTACTTGTAACTGATATGTTTTTCAAGTATGTTTTTATTTTTAACTTTTCAAGCAGCTGATAAAGAGATCGATGGAAAGTA] consensusID : consensus_2384#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [GACTGTATCATCTGAGCGGCTGTGTTTTCCTCCTCTTTAGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACG] [+] EMBL CA330488 [GACTGTATCATCTGAGCGGCTGTGTTTTCCTCCTCTTTAGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2384#1 ------------------------------------------------------------ consensus_2384#3 ------------------------------------------------------------ consensus_2384#0 TGTGCTTGAACAAAACCGGATTCTGCAAACATGCTGGCAGCCAGGTTTCTCCGCCGCGCC 60 consensus_2384#2 ------------------------------------------------------------ consensus_2384#1 ------------------------------------------------------------ consensus_2384#3 ------------------------------------------------------------ consensus_2384#0 CTCCCCGTGTTGAGACAAACTCGGTCCTACGCCGAGGCTGCCACCGGTGCCCCGCAGATG 120 consensus_2384#2 ------------------------------------------------------------ consensus_2384#1 ------------------------------------------------------------ consensus_2384#3 ------------------------------------------------------------ consensus_2384#0 TCCTTCACTTTTGCCTCCCCGACACAGGTGTTCTTCCAAGAGGCCAGTGTTAAACAGGTG 180 consensus_2384#2 ------------------------------------------------------------ consensus_2384#1 ------------------------------------------------------------ consensus_2384#3 ------------------------------------------------------------ consensus_2384#0 GACGTGCCCACGCTCACGGGTACTTTCGGCATCCTTCCTGCCCACGTCCCCACCCTGCAG 240 consensus_2384#2 ------------------------------------------------------------ consensus_2384#1 ------------------------------------------------------------ consensus_2384#3 ------------------------------------------------------------ consensus_2384#0 GTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTC 300 consensus_2384#2 ------------------------------------------------------------ consensus_2384#1 -----------------------------------CCCCAGCCTGCAATGAAAAGACACA 25 consensus_2384#3 ------------------------------------------------------------ consensus_2384#0 GTGAGCAGCGGGTCGGTAACCGTCAACGCGGATTCTTCAGTGCAGCTGCTGGCTGAGGAG 360 consensus_2384#2 ------------------------------------------------------------ consensus_2384#1 CGGACTCACACTGTTAATAAGCAGGAAAAGGCAGCCAAGGCCAACCTGGAGAAGGCCCAG 85 consensus_2384#3 ------------------------------------------------------------ consensus_2384#0 GCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAGGCCCAG 420 consensus_2384#2 ------------------------------------------------------------ consensus_2384#1 TCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAG 145 consensus_2384#3 ------------------------------------------------------------ consensus_2384#0 TCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAG 480 consensus_2384#2 ----------------GACGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACCCTGAG 44 consensus_2384#1 GCCA--ACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGT---GGTAATCTTTTCTGTT 200 consensus_2384#3 ---G--ACTGTATCATCTGAGCGGCTGTGTTTTCCTCCTCTTTAGGTAATCTTTTCTGTT 55 consensus_2384#0 GCCA--ACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGT---GGTAATCTTTTCTGTT 535 consensus_2384#2 GCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGCTCGTGCC 104 ** * * * * * * * * * ** consensus_2384#1 TC-TTCAGTGGAAA----GCGGCAGTCCGTCT-------GTTTTTCCAGCTCACGTTGGT 248 consensus_2384#3 TC-TTCAGTGGAAA----GCGGCAGTCCGTCT-------GTTTTTCCAGCTCACGTTGGT 103 consensus_2384#0 TC-TTCAGTGGGAA----GCGGCAGTCCGTCT-------GTTTTTCCAGCTCACGTTGGT 583 consensus_2384#2 GAATTCGGCACGAGCTTTGCGATA-TCTGTTTAAAAGTTGTACTTGTAACTGATATGTTT 163 *** * * *** * ** ** * ** ** * ** * * * consensus_2384#1 GTCCAGAA-GATTCCATGCTTTGCTTTGTA--CAGTGGATAAAA---------------- 289 consensus_2384#3 GTCCAGAA-GATTCCATGCTTTGCTTTGTA--CAGTGGATAAAATGACAAGAATAAATTT 160 consensus_2384#0 GTCCAGAA-GATTCCATGCTTTGCTTTGTA--CAGTGGATAAAATGACAAGAATAAATTT 640 consensus_2384#2 TTCAAGTATGTTTTTATTTTTAACTTTTCAAGCAGCTGATAAAGAGATCGATGGAAAGTA 223 ** ** * * ** ** ** **** * *** ****** consensus_2384#1 ---------------- consensus_2384#3 ATTTGGAATTACACG- 175 consensus_2384#0 ATTTGGAATTACACGT 656 consensus_2384#2 ---------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |