cluster # 2384

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Takifugu rubripes
cluster # 2384 cluster # 2384 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2384#0 length = 656 sequences # 3
consensus_2384#1 length = 289 sequences # 1

consensus_2384#2 length = 223 sequences # 1
consensus_2384#3 length = 175 sequences # 1

consensusID : consensus_2384#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 656
fasta sequence

                              [TGTGCTTGAACAAAACCGGATTCTGCAAACATGCTGGCAGCCAGGTTTCTCCGCCGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACGCCGAGGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGTGTTCTTCCAAGAGGCCAGTGTTAAACAGGTGGACGTGCCCACGCTCACGGGTACTTTCGGCATCCTTCCTGCCCACGTCCCCACCCTGCAGGTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTCGTGAGCAGCGGGTCGGTAACCGTCAACGCGGATTCTTCAGTGCAGCTGCTGGCTGAGGAGGCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGGAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACGT]

[+] EMBL FR0055167            [TGTGCTTGAACAAAACCGGATTCTGCAAACATGCTGGCAGCCAGGTTTCTCCGCCGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACGCCGAGGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGTGTTCTTCCAAGAGGCCAGTGTTAAACAGGTGGACGTGCCCACGCTCACGGGTACTTTCGGCATCCTTCCTGCCCACGTCCCCACCCTGCAGGTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTCGTGAGCAGCGGGTCGGTAACCGTCAACGCGGATTCTTCAGTGCAGCTGCTGGCTGAGGAGGCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAATGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGGAA                                                                                                            ]
[+] EMBL FR0055302            [       GAACAAAACCGGATTCTGCAAACATGCTGGCAGCCAGGTTTCTCCGCCGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACGCCGATGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGTGTTCTTCCAAGAGGCCAGTGTTAAACAGGTGGACGTGCCCACGCTCACGGGTACTTTCGGCATCCTTCCTGCCCACGTCCCCACCCTGCAGGTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTCGTGAGCAGCGGATCGGTAACCGTCAACGCGGCTTCTTCAGTGCAGCTGCTGGCTGAGGAGGCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAAGGCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCG                                                                                                                                                                                                              ]
[+] EMBL CA330313             [                                                                                                                                                                                                               GGCATCCTTCCTGCCCACGTCCCCACCCTGCAGGTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTCGTGAGCAGCGGGTCGGTAACCGTCAACGCGGATTCTTCAGTGCAGCTGCTGGCTGAGGAGGCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACGT]




>consensus_2384#0
TGTGCTTGAACAAAACCGGATTCTGCAAACATGCTGGCAGCCAGGTTTCTCCGCCGCGCC
CTCCCCGTGTTGAGACAAACTCGGTCCTACGCCGAGGCTGCCACCGGTGCCCCGCAGATG
TCCTTCACTTTTGCCTCCCCGACACAGGTGTTCTTCCAAGAGGCCAGTGTTAAACAGGTG
GACGTGCCCACGCTCACGGGTACTTTCGGCATCCTTCCTGCCCACGTCCCCACCCTGCAG
GTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTC
GTGAGCAGCGGGTCGGTAACCGTCAACGCGGATTCTTCAGTGCAGCTGCTGGCTGAGGAG
GCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAGGCCCAG
TCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAG
GCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTC
AGTGGGAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATG
CTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACGT

consensusID : consensus_2384#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [CCCCAGCCTGCAATGAAAAGACACACGGACTCACACTGTTAATAAGCAGGAAAAGGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAA]

[+] EMBL CA844737             [CCCCAGCCTGCAATGAAAAGACACACGGACTCACACTGTTAATAAGCAGGAAAAGGCAGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGTGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAA]




>consensus_2384#1
CCCCAGCCTGCAATGAAAAGACACACGGACTCACACTGTTAATAAGCAGGAAAAGGCAGC
CAAGGCCAACCTGGAGAAGGCCCAGTCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAG
GGCAGAGGTTCAGATCAGCATAGAGGCCAACGAGGCCATCATCAAGGCTCTGGAGTAGAG
CTGTGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTC
ACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAA

consensusID : consensus_2384#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [GACGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACCCTGAGGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGCTCGTGCCGAATTCGGCACGAGCTTTGCGATATCTGTTTAAAAGTTGTACTTGTAACTGATATGTTTTTCAAGTATGTTTTTATTTTTAACTTTTCAAGCAGCTGATAAAGAGATCGATGGAAAGTA]

[+] EMBL CA847287             [GACGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACCCTGAGGCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGCTCGTGCCGAATTCGGCACGAGCTTTGCGATATCTGTTTAAAAGTTGTACTTGTAACTGATATGTTTTTCAAGTATGTTTTTATTTTTAACTTTTCAAGCAGCTGATAAAGAGATCGATGGAAAGTA]




>consensus_2384#2
GACGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACCCTGAGGCTGCCACCGGTGCCC
CGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGCTCGTGCCGAATTCGGCACGAGCT
TTGCGATATCTGTTTAAAAGTTGTACTTGTAACTGATATGTTTTTCAAGTATGTTTTTAT
TTTTAACTTTTCAAGCAGCTGATAAAGAGATCGATGGAAAGTA

consensusID : consensus_2384#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence

                              [GACTGTATCATCTGAGCGGCTGTGTTTTCCTCCTCTTTAGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACG]

[+] EMBL CA330488             [GACTGTATCATCTGAGCGGCTGTGTTTTCCTCCTCTTTAGGTAATCTTTTCTGTTTCTTCAGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATGCTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACG]




>consensus_2384#3
GACTGTATCATCTGAGCGGCTGTGTTTTCCTCCTCTTTAGGTAATCTTTTCTGTTTCTTC
AGTGGAAAGCGGCAGTCCGTCTGTTTTTCCAGCTCACGTTGGTGTCCAGAAGATTCCATG
CTTTGCTTTGTACAGTGGATAAAATGACAAGAATAAATTTATTTGGAATTACACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2384#1      ------------------------------------------------------------
consensus_2384#3      ------------------------------------------------------------
consensus_2384#0      TGTGCTTGAACAAAACCGGATTCTGCAAACATGCTGGCAGCCAGGTTTCTCCGCCGCGCC 60
consensus_2384#2      ------------------------------------------------------------
                                                                                  

consensus_2384#1      ------------------------------------------------------------
consensus_2384#3      ------------------------------------------------------------
consensus_2384#0      CTCCCCGTGTTGAGACAAACTCGGTCCTACGCCGAGGCTGCCACCGGTGCCCCGCAGATG 120
consensus_2384#2      ------------------------------------------------------------
                                                                                  

consensus_2384#1      ------------------------------------------------------------
consensus_2384#3      ------------------------------------------------------------
consensus_2384#0      TCCTTCACTTTTGCCTCCCCGACACAGGTGTTCTTCCAAGAGGCCAGTGTTAAACAGGTG 180
consensus_2384#2      ------------------------------------------------------------
                                                                                  

consensus_2384#1      ------------------------------------------------------------
consensus_2384#3      ------------------------------------------------------------
consensus_2384#0      GACGTGCCCACGCTCACGGGTACTTTCGGCATCCTTCCTGCCCACGTCCCCACCCTGCAG 240
consensus_2384#2      ------------------------------------------------------------
                                                                                  

consensus_2384#1      ------------------------------------------------------------
consensus_2384#3      ------------------------------------------------------------
consensus_2384#0      GTCCTCAGGCCCGGTGTCGTCACAGTTTTCAGCGATGATGGCTCCGCCGTCAAGTACTTC 300
consensus_2384#2      ------------------------------------------------------------
                                                                                  

consensus_2384#1      -----------------------------------CCCCAGCCTGCAATGAAAAGACACA 25
consensus_2384#3      ------------------------------------------------------------
consensus_2384#0      GTGAGCAGCGGGTCGGTAACCGTCAACGCGGATTCTTCAGTGCAGCTGCTGGCTGAGGAG 360
consensus_2384#2      ------------------------------------------------------------
                                                                                  

consensus_2384#1      CGGACTCACACTGTTAATAAGCAGGAAAAGGCAGCCAAGGCCAACCTGGAGAAGGCCCAG 85
consensus_2384#3      ------------------------------------------------------------
consensus_2384#0      GCGGTTTCTTTGGACCAGCTGGATGTTGCTGCAGCCAAGGCCAACCTGGAGAAGGCCCAG 420
consensus_2384#2      ------------------------------------------------------------
                                                                                  

consensus_2384#1      TCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAG 145
consensus_2384#3      ------------------------------------------------------------
consensus_2384#0      TCTGCCCTGGCGGGCGCATCCGACGAGGCGGCGAGGGCAGAGGTTCAGATCAGCATAGAG 480
consensus_2384#2      ----------------GACGCGCCCTCCCCGTGTTGAGACAAACTCGGTCCTACCCTGAG 44
                                                                                  

consensus_2384#1      GCCA--ACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGT---GGTAATCTTTTCTGTT 200
consensus_2384#3      ---G--ACTGTATCATCTGAGCGGCTGTGTTTTCCTCCTCTTTAGGTAATCTTTTCTGTT 55
consensus_2384#0      GCCA--ACGAGGCCATCATCAAGGCTCTGGAGTAGAGCTGT---GGTAATCTTTTCTGTT 535
consensus_2384#2      GCTGCCACCGGTGCCCCGCAGATGTCCTTCACTTTTGCCTCCCCGACACAGGCTCGTGCC 104
                            **     *  *      *   *    *    *      *  *     *  **  

consensus_2384#1      TC-TTCAGTGGAAA----GCGGCAGTCCGTCT-------GTTTTTCCAGCTCACGTTGGT 248
consensus_2384#3      TC-TTCAGTGGAAA----GCGGCAGTCCGTCT-------GTTTTTCCAGCTCACGTTGGT 103
consensus_2384#0      TC-TTCAGTGGGAA----GCGGCAGTCCGTCT-------GTTTTTCCAGCTCACGTTGGT 583
consensus_2384#2      GAATTCGGCACGAGCTTTGCGATA-TCTGTTTAAAAGTTGTACTTGTAACTGATATGTTT 163
                         *** *    *     ***  * ** ** *       **  **  * ** *  *   *

consensus_2384#1      GTCCAGAA-GATTCCATGCTTTGCTTTGTA--CAGTGGATAAAA---------------- 289
consensus_2384#3      GTCCAGAA-GATTCCATGCTTTGCTTTGTA--CAGTGGATAAAATGACAAGAATAAATTT 160
consensus_2384#0      GTCCAGAA-GATTCCATGCTTTGCTTTGTA--CAGTGGATAAAATGACAAGAATAAATTT 640
consensus_2384#2      TTCAAGTATGTTTTTATTTTTAACTTTTCAAGCAGCTGATAAAGAGATCGATGGAAAGTA 223
                       ** ** * * **  **  **  ****  *  ***  ******                 

consensus_2384#1      ----------------
consensus_2384#3      ATTTGGAATTACACG- 175
consensus_2384#0      ATTTGGAATTACACGT 656
consensus_2384#2      ----------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)