Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 2390 cluster # 2390       Sequences # 6       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2390#0 length = 822 sequences # 5  
 consensus_2390#1 length = 325 sequences # 1  
consensusID : consensus_2390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 822
fasta sequence 
                              [TGCTGACTCCAGGATTCAAAGGATTTAATCGTTTCCCGTCCAACCCAAAAGAAAATGGCCAATAAGATGGC-CATCGTGGCGGTGATGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATC-GGCGGAGGGC-TTTTCCTGACCATCTACGATGCAAACTCTGGGAAGACCGTGACCATTGACGCCAGAGAGACGGCACCACGCAACGCAACACAGGACATGTTTGGGAGCAATCCCGATGCATCAACGACAGGAGGGTTGTCTATCGCCGTGCCGGGGGAGCTTCGAGGGTATGAGATGGCACACCAAAAATACGGCAAGCTTCCCTGGAAAGACCTCTTCCAGCCCAGCATCGATTATGCAGAGAAAGGCTTCCCCGTGGGGAAGGCGCTCGCCAAGGCCTTGGCCGAGAAAAAGCGAACCATCGTCGAAGATAAAAACTTATGTGAGGTGTTTTGCAACCAAAATAAAAGCGACGTCCTGAAAGAAAAAGAAATTCTCCGATACCCCAAGCTTGCAGAAACCTACAGGACAATAGCAGCGGAGGGGGCTAAGGCTTTCTACGAGGGCCCGCTCGCTCAGAACCTCGTAGCGGACATTCAGGCAGCAGAGGGCATCATCACAATGGAGGACCTGAGG]

[+] EMBL CA589960             [TGCTGACTCCAGGATTCAAAGGATTTAATCGTTTCCCGTCCAACCCAAAAGAAAATGGCCAATAAGATGGC CATCGTGGCGGTGATGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATC GGCGGAGGGC TTTTCCTGACCATCTACGATGCAAACTCTGGGAAGACCGTGACCATTGACGCCAGAGAGACGGCACCACGCAACGCAACACAGGACATGTTTGGGAGCAATCCCGATGCATCAACGACAGGAGGGTTGTCTATCGCCGTGCCGGGGGAGCTTCGAGGGTATGAGATGGCACACCAAAAATACGGCAAGCTTCCCTGGAAAGACCTCTTCCAGCCCAGCATCGATTATGCAGAGAAAGGCTTCCCCGTGGGGAAGGCGCTCGCCAAGGCCTTGGCCGAGAAAAAGCGAACCATCGTCGAAGATAAAAACTTATGTGAGGTGTTT                                                                                                                                                                                       ]
[+] EMBL FR0059391            [                                                AAGAAAATGGCCAATAAGATGGCTCATCGTGGCGGTGATGCTGCTGCTGCTGGAGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCAT   CATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATC GGCGGAGGGC TTTTTCTGACCATCTACGATGCAAACTCTGGGAAGACCGTGACCATTGACGCCAGAGAGGACGCACCACGCAACGAAACACAGGACATGTGTGGGAGCAATCCCGATGCATCAACGACAGGAGGGTTGCTTATCGCCCGGCC                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL FR0059862            [                                                    AAATGGCCAATAAGATGGC CATCGTGGCGGTGATGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGGGTCTCTACTGTGCGGGGGACTGATGAACCCCCACAGCATGGGCCTC GGGCGGAGGC TTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL FR0059952            [                                                                        CATCGTGGCGGTGATGCTGCTGCTGCTGGGGGGCGGCCGCACGGGTCTCGTCGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGGGGCGGCAGACGCAGGGCCGCGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGCCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATCGGGGGGAGGGCTTTTTCCTGACCATCTACGATACAAACCTTTGGAAGACCGTGACCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA591612             [                                                                                      TGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATC GGCGGAGGGC TTTTCCTGACCATCTACGATGCAAACTCTGGGAAGACCGTGACCATTGACGCCAGAGAGACGGCACCACGCAACGCAACACAGGACATGTTTGGGAGCAATCCCGATGCATCAACGACAGGAGGGTTGTCTATCGCCGTGCCGGGGGAGCTTCGAGGGTATGAGATGGCACACCAAAAATACGGCAAGCTTCCCTGGAAAGACCTCTTCCAGCCCAGCATCGATTATGCAGAGAAAGGCTTCCCCGTGGGGAAGGCGCTCGCCAAGGCCTTGGCCGAGAAAAAGCGAACCATCGTCGAAGATAAAAACTTATGTGAGGTGTTTTGCAACCAAAATAAAAGCGACGTCCTGAAAGAAAAAGAAATTCTCCGATACCCCAAGCTTGCAGAAACCTACAGGACAATAGCAGCGGAGGGGGCTAAGGCTTTCTACGAGGGCCCGCTCGCTCAGAACCTCGTAGCGGACATTCAGGCAGCAGAGGGCATCATCACAATGGAGGACCTGAGG]




>consensus_2390#0
TGCTGACTCCAGGATTCAAAGGATTTAATCGTTTCCCGTCCAACCCAAAAGAAAATGGCC
AATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTC
GGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTG
GCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCT
GCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATG
GGCATCGGCGGAGGGCTTTTCCTGACCATCTACGATGCAAACTCTGGGAAGACCGTGACC
ATTGACGCCAGAGAGACGGCACCACGCAACGCAACACAGGACATGTTTGGGAGCAATCCC
GATGCATCAACGACAGGAGGGTTGTCTATCGCCGTGCCGGGGGAGCTTCGAGGGTATGAG
ATGGCACACCAAAAATACGGCAAGCTTCCCTGGAAAGACCTCTTCCAGCCCAGCATCGAT
TATGCAGAGAAAGGCTTCCCCGTGGGGAAGGCGCTCGCCAAGGCCTTGGCCGAGAAAAAG
CGAACCATCGTCGAAGATAAAAACTTATGTGAGGTGTTTTGCAACCAAAATAAAAGCGAC
GTCCTGAAAGAAAAAGAAATTCTCCGATACCCCAAGCTTGCAGAAACCTACAGGACAATA
GCAGCGGAGGGGGCTAAGGCTTTCTACGAGGGCCCGCTCGCTCAGAACCTCGTAGCGGAC
ATTCAGGCAGCAGAGGGCATCATCACAATGGAGGACCTGAGG

consensusID : consensus_2390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence 
                              [TGGCCAATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGAGGCGGGCGGCACGTTTCTCGGGGTTTTCTACGGCGCGGTGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATCGGCGGAGGGCTTTTCCTGACCATCTACGAAGCAAAACTCTGGGACGGCTTCATCTTTCCCCACTAGAAGAGCCT]

[+] EMBL FR0059396            [TGGCCAATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGAGGCGGGCGGCACGTTTCTCGGGGTTTTCTACGGCGCGGTGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATCGGCGGAGGGCTTTTCCTGACCATCTACGAAGCAAAACTCTGGGACGGCTTCATCTTTCCCCACTAGAAGAGCCT]




>consensus_2390#1
TGGCCAATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGAGGCGGGCGGCACGT
TTCTCGGGGTTTTCTACGGCGCGGTGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGG
CCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGG
GTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACA
GCATGGGCATCGGCGGAGGGCTTTTCCTGACCATCTACGAAGCAAAACTCTGGGACGGCT
TCATCTTTCCCCACTAGAAGAGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2390#0      TGCTGACTCCAGGATTCAAAGGATTTAATCGTTTCCCGTCCAACCCAAAAGAAAATGGCC 60
consensus_2390#1      -------------------------------------------------------TGGCC 5
                                                                             *****

consensus_2390#0      AATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTC 120
consensus_2390#1      AATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGAGGCGGGCGGCACGTTTCTC 65
                      **************************************** ***** *************

consensus_2390#0      GGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTG 180
consensus_2390#1      GGGGTTTTCTACGGCGCGGTGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTG 125
                      **************** ** ****************************************

consensus_2390#0      GCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCT 240
consensus_2390#1      GCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCT 185
                      ************************************************************

consensus_2390#0      GCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATG 300
consensus_2390#1      GCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATG 245
                      ************************************************************

consensus_2390#0      GGCATCGGCGGAGGGCTTTTCCTGACCATCTACGATGCAAA-CTCTGGGAAGACCGTGAC 359
consensus_2390#1      GGCATCGGCGGAGGGCTTTTCCTGACCATCTACGAAGCAAAACTCTGGGACGGCTTCATC 305
                      *********************************** ***** ******** * *     *

consensus_2390#0      CATTGACGCCAGAGAGACGGCACCACGCAACGCAACACAGGACATGTTTGGGAGCAATCC 419
consensus_2390#1      TTTCCCCACTAGAAGAGCCT---------------------------------------- 325
                        *   * * ***    *                                          

consensus_2390#0      CGATGCATCAACGACAGGAGGGTTGTCTATCGCCGTGCCGGGGGAGCTTCGAGGGTATGA 479
consensus_2390#1      ------------------------------------------------------------
                                                                                  

consensus_2390#0      GATGGCACACCAAAAATACGGCAAGCTTCCCTGGAAAGACCTCTTCCAGCCCAGCATCGA 539
consensus_2390#1      ------------------------------------------------------------
                                                                                  

consensus_2390#0      TTATGCAGAGAAAGGCTTCCCCGTGGGGAAGGCGCTCGCCAAGGCCTTGGCCGAGAAAAA 599
consensus_2390#1      ------------------------------------------------------------
                                                                                  

consensus_2390#0      GCGAACCATCGTCGAAGATAAAAACTTATGTGAGGTGTTTTGCAACCAAAATAAAAGCGA 659
consensus_2390#1      ------------------------------------------------------------
                                                                                  

consensus_2390#0      CGTCCTGAAAGAAAAAGAAATTCTCCGATACCCCAAGCTTGCAGAAACCTACAGGACAAT 719
consensus_2390#1      ------------------------------------------------------------
                                                                                  

consensus_2390#0      AGCAGCGGAGGGGGCTAAGGCTTTCTACGAGGGCCCGCTCGCTCAGAACCTCGTAGCGGA 779
consensus_2390#1      ------------------------------------------------------------
                                                                                  

consensus_2390#0      CATTCAGGCAGCAGAGGGCATCATCACAATGGAGGACCTGAGG 822
consensus_2390#1      -------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)