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Takifugu rubripes
cluster # 2422 cluster # 2422       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2422#0 length = 822 sequences # 5  
consensus_2422#1 length = 613 sequences # 1  

consensusID : consensus_2422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 822
fasta sequence
                              [TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGCATCGGGCAGCTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTTCCTGCCAGCCTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTTGATCTCCTTCCAAATCTCAAATCTCCAGTGCTCAAGGATTTA]

[+] EMBL CA846125             [TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATACTTTGGATTTCCTGGCGGGTTTTAGGACAGAAGAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGCATCGGGCAGCTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTTCCTGCCAGCCTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTTGATCTCCTTCCAAATCTCAAATCTCCAGTGCTCAAGGATTTA]
[+] EMBL CA590808             [                    AATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BU807382             [                           CGTTTCAAGAAAACAGATAAAGTGGATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTC                                                                                                                                                                                    ]
[+] EMBL FR0061403            [                                                   GATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL FR0061883            [                                                       TCCTGGCGGGATTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGTCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTCGGCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_2422#0 TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTG GCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCA CGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTT TATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCC GACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACA CAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAAC CAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTC AGTCATAACCAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGC CTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGC CTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGT CTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGC ATCGGGCAGCTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTT CCTGCCAGCCTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTT GATCTCCTTCCAAATCTCAAATCTCCAGTGCTCAAGGATTTA



consensusID : consensus_2422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence
                              [GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTACTTTATTCATCCCCGTAGGGAAATTGAATTGTAGTAGCAATAAAGGACAGAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCTAACAGCACTTCTGTATTCTGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGC]

[+] EMBL CA590587             [GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTACTTTATTCATCCCCGTAGGGAAATTGAATTGTAGTAGCAATAAAGGACAGAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCTAACAGCACTTCTGTATTCTGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGC]


>consensus_2422#1 GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTACTTTATTCATCCCCGT AGGGAAATTGAATTGTAGTAGCAATAAAGGACAGAGAATGTTTATCGAATAAACTGTGAC GTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAA ACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATC AGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCTAACAGCACTTCTGTATTC TGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTC CAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCA GCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTG AGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAAC CAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTG TCCCACAATAAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2422#0      TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTG 60
consensus_2422#1      ------------------------------------------------------------
                                                                                  

consensus_2422#0      GCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCA 120
consensus_2422#1      ----------------GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTA 44
                                         *   *  **  ***      ** * *       * * ** *

consensus_2422#0      CGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTT 180
consensus_2422#1      CTTTATT-CATCCCCGTAGGGAAATTGAATTGTAGTAGCAATAAAGGAC-AGAGAATGTT 102
                      *   *   *  **   *       *      *  **   * * ***  * * ********

consensus_2422#0      TATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCC 240
consensus_2422#1      TATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCC 162
                      ************************************************************

consensus_2422#0      GACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACA 300
consensus_2422#1      GACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACA 222
                      ************************************************************

consensus_2422#0      CAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGAT------------ 348
consensus_2422#1      CAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCT 282
                      ************************************************            

consensus_2422#0      ---------------------------------------CTGGATGACAACCAGCTGAGC 369
consensus_2422#1      AACAGCACTTCTGTATTCTGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGC 342
                                                             *********************

consensus_2422#0      TGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAAC 429
consensus_2422#1      TGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAAC 402
                      ************************************************************

consensus_2422#0      CAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTC 489
consensus_2422#1      CAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTC 462
                      ********* **************************************************

consensus_2422#0      CAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAG 549
consensus_2422#1      CAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAG 522
                      ************************************************************

consensus_2422#0      CTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGT 609
consensus_2422#1      CTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGT 582
                      ************************************************************

consensus_2422#0      CTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGCATCGGGCAG 669
consensus_2422#1      CTGCAGAAACTGAACCTGTCCCACAATAAGC----------------------------- 613
                      *******************************                             

consensus_2422#0      CTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTTCCTGCCAGC 729
consensus_2422#1      ------------------------------------------------------------
                                                                                  

consensus_2422#0      CTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTTGATCTCCTT 789
consensus_2422#1      ------------------------------------------------------------
                                                                                  

consensus_2422#0      CCAAATCTCAAATCTCCAGTGCTCAAGGATTTA 822
consensus_2422#1      ---------------------------------
                                                       




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)