These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 822 fasta sequence [TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGCATCGGGCAGCTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTTCCTGCCAGCCTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTTGATCTCCTTCCAAATCTCAAATCTCCAGTGCTCAAGGATTTA] [+] EMBL CA846125 [TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATACTTTGGATTTCCTGGCGGGTTTTAGGACAGAAGAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGCATCGGGCAGCTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTTCCTGCCAGCCTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTTGATCTCCTTCCAAATCTCAAATCTCCAGTGCTCAAGGATTTA] [+] EMBL CA590808 [ AATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTT ] [+] EMBL BU807382 [ CGTTTCAAGAAAACAGATAAAGTGGATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTC ] [+] EMBL FR0061403 [ GATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGAT ] [+] EMBL FR0061883 [ TCCTGGCGGGATTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGTCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTCGGCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCC ] consensusID : consensus_2422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTACTTTATTCATCCCCGTAGGGAAATTGAATTGTAGTAGCAATAAAGGACAGAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCTAACAGCACTTCTGTATTCTGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGC] [+] EMBL CA590587 [GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTACTTTATTCATCCCCGTAGGGAAATTGAATTGTAGTAGCAATAAAGGACAGAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCTAACAGCACTTCTGTATTCTGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2422#0 TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTG 60 consensus_2422#1 ------------------------------------------------------------ consensus_2422#0 GCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCA 120 consensus_2422#1 ----------------GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTA 44 * * ** *** ** * * * * ** * consensus_2422#0 CGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTT 180 consensus_2422#1 CTTTATT-CATCCCCGTAGGGAAATTGAATTGTAGTAGCAATAAAGGAC-AGAGAATGTT 102 * * * ** * * * ** * * *** * * ******** consensus_2422#0 TATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCC 240 consensus_2422#1 TATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCC 162 ************************************************************ consensus_2422#0 GACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACA 300 consensus_2422#1 GACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACA 222 ************************************************************ consensus_2422#0 CAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGAT------------ 348 consensus_2422#1 CAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCT 282 ************************************************ consensus_2422#0 ---------------------------------------CTGGATGACAACCAGCTGAGC 369 consensus_2422#1 AACAGCACTTCTGTATTCTGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGC 342 ********************* consensus_2422#0 TGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAAC 429 consensus_2422#1 TGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAAC 402 ************************************************************ consensus_2422#0 CAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTC 489 consensus_2422#1 CAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTC 462 ********* ************************************************** consensus_2422#0 CAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAG 549 consensus_2422#1 CAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAG 522 ************************************************************ consensus_2422#0 CTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGT 609 consensus_2422#1 CTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGT 582 ************************************************************ consensus_2422#0 CTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGCATCGGGCAG 669 consensus_2422#1 CTGCAGAAACTGAACCTGTCCCACAATAAGC----------------------------- 613 ******************************* consensus_2422#0 CTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTTCCTGCCAGC 729 consensus_2422#1 ------------------------------------------------------------ consensus_2422#0 CTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTTGATCTCCTT 789 consensus_2422#1 ------------------------------------------------------------ consensus_2422#0 CCAAATCTCAAATCTCCAGTGCTCAAGGATTTA 822 consensus_2422#1 --------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |