These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [GACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTGTCGTGGGACACAGATCAGTGGAGGTTACCGGGCCAACGTGAGCACTTGGAGTCCTCTGGCTCTACAAGTGAGCCAATGGAAATCTCTCCTAAGAGGAGAGCGCACTTTCTTCATGGACCATATCCAGCCACTCACTTCGGACCTAAAGCTTGTATTCTTCCCAATCCAACTTCAGTCATGCATATCCAGGATCCAGCCAGCCAGCGTCTCACCTGGAACAAACCCCCTGTTAATGTCCTAGTCATCAGAAAAATAAGAGACGAGAGCCTGGTCGAGCCTTTTAAAGAGCTCTGCAGGTTTTTAGTAGAGGAGAAGCAGATGATGGTGTACGTGGAGCGCAGGGTAGCGGATGACGCCGCTCTGTTAAAAGACGAGTCTTTCAGTCTCATCCGCAACCAGCTCTGCACTTTTAGGGAAGGTTATGATGATATCTCCAACTGCATCGACCTGATCATCTGCCTTGGTGGTGATGGGACTCTCCTCTATGCCTCCTCCCTCTTCCAGGACAGCGTGCCTCCTGTCATGGCCTTTC] [+] EMBL CA329942 [GACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTGTCGTGGGACACAGATCAGTGGAGGTTACCGGGCCAACGTGAGCACTTGGAGTCCTCTGGCTCTACAAGTGAGCCAATGGAAATCTCTCCTAAGAGGAGAGCGCACTTTCTTCATGGACCATATCCAGCCACTCACTTCGGACCTAAAGCTTGTATTCTTCCCAATCCAACTTCAGTCATGCATATCCAGGATCCAGCCAGCCAGCGTCTCACCTGGAACAAACCCCCTGTTAATGTCCTAGTCATCAGAAAAATAAGAGACGAGAGCCTGGTCGAGCCTTTTAAAGAGCTCTGCAGGTTTTTAGTAGAGGAGAAGCAGATGATGGTGTACGTGGAGCGCAGGGTAGCGGATGACGCCGCTCTGTTAAAAGACGAGTCTTTCAGTCTCATCCGCAACCAGCTCTGCACTTTTAGGGAAGGTTATGATGATATCTCCAACTGCATCGACCTGATCATCTGCCTTGGTGGTGATGGGACTCTCCTCTATGCCTCCTCCCTCTTCCAGGACAGCGTGCCTCCTGTCATGGCCTTTC] consensusID : consensus_243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [CCTTTTTTGTAAAACATGTTGGTGATCTACAGGGATTTTAGCGACATGTGCATGTTTGCCTATTAATGCCAGAAATGGAGAATTCAGAGGCAGGCCTAACTCCAGGTTCCATGGCAGTGCCACAGGAGGATGTGGCAAAGACTGTAGTCACCTGTCGGAGTCAGTCAGGCTCTCTAGGCACAGGGAGAACCGTACCAGGTCACCAAGGAGACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTG] [+] EMBL FR0063960 [CCTTTTTTGTAAAACATGTTGGTGATCTACAGGGATTTTAGCGACATGTGCATGTTTGCCTATTAATGCCAGAAATGGAGAATTCAGAGGCAGGCCTAACTCCAGGTTCCATGGCAGTGCCACAGGAGGATGTGGCAAAGACTGTAGTCACCTGTCGGAGTCAGTCAGGCTCTCTAGGCACAGGGAGAACCGTACCAGGTCACCAAGGAGACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_243#0 GACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTGTCGTGGG 60 consensus_243#1 ------------------------------------------------------------ consensus_243#0 ACACAGATCAGTGGAGGTTACCGGGCCAACGTGAGCACTTGGAGTCCTCTGGCTCTACAA 120 consensus_243#1 ------------------------------------------------------------ consensus_243#0 GTGAGCCAATGGAAATCTCTCCTAAGAGGAGAGCGCACTTTCTTCATGGACCATATCCAG 180 consensus_243#1 -------------------------------------CCTTTTTTGTAAAACATGTT-GG 22 * ** ** * * *** * * consensus_243#0 CCACTCACTTCGGACCTAAAGCTTGTATTCTTCCCAATCCAACTTCAGTCATGCATATCC 240 consensus_243#1 TGATCTACAG-GGATTTTAGCGACATGTGCATGTTTGCCTA---TTAATGCCAGAAATGG 78 * ** *** * * * * * * * * * * * * ** consensus_243#0 AGGATCCAGCCAGCCAGCGTCTCACCTGGAACAAACCCCCTGTTAATGTCCTAGTCATCA 300 consensus_243#1 AGAATTCAG--AGGCAG-GCCTAACTC----CAGGTTCCATGGCAGTGCCACAGGAGGAT 131 ** ** *** ** *** * ** ** ** ** ** * ** * ** consensus_243#0 GAAAAATAAGAGACGAGAGCCTGGTCGAGCCTTTTAAAGAGCTCTGCAGGTTTTTAGTAG 360 consensus_243#1 GTGGCAAAGACTGTAGTCACCTGTCGGAGTCAGTCAG---GCTCTCTAGGCAC------A 182 * * * **** *** * * * ***** *** consensus_243#0 AGGAGAAGCAGATGATGGTGTACGTGGAGCGCAGGGTAGCGGATGACGCCGCTCTGTTAA 420 consensus_243#1 GGGAGAACCGTACCA-GGTCACCAAGGAG---ACACCAGAAGGGGACAAAGTTGCAGCGA 238 ****** * * * *** * **** * ** * *** * * * consensus_243#0 AAGACGAGTCTTTCAGTCTCATCCGCAACCAGCTCTGCACTTTTAGGGAAGGTTATGATG 480 consensus_243#1 CGGATGGGTGATCAAGAA-CAGCTG----------------------------------- 262 ** * ** * ** ** * * consensus_243#0 ATATCTCCAACTGCATCGACCTGATCATCTGCCTTGGTGGTGATGGGACTCTCCTCTATG 540 consensus_243#1 ------------------------------------------------------------ consensus_243#0 CCTCCTCCCTCTTCCAGGACAGCGTGCCTCCTGTCATGGCCTTTC 585 consensus_243#1 --------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |