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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence
[TTGTAGTCCTATCTGTGGGGCTGGTCTGGCGCCAGCCATCCCATCATGATGGTTGGATCAGCTCATCCATTGAGTTCTGATGGGTCCAAAACACACACCTTCCATCTCTGCGTGGTCTGAGCGGAAGGCGGAGAACCGGTCCAGCAGGTCTGCCGGTTCTGTGCCAGCTTCATTCAGCATTGGTGACTGTTGGTTTTTGGAGCGCGGTTTACGAGGCGCCGGCAGGCTGCTCCAGGCTCCGCCCACATCTTGAAGTCGCCCAACAGTAGCAGCTGCTTGTTTGTTTAACCTGTTTCTGAGGTGACCATCAAGTCCAACCTGGCCGAGGCCATGGAACACAACAGCACCGTGGTTCTAAGCTGCTCCGCCAAAGGCTCCTTCCTCAAGTTCACCTGGACCAACAGAACCAAGCCGCTCATCCCCGATGGTAAAAGGATAACGCTGAAAGAGGAGGAACTGTCCAGTGTCATCACCATCACAGGTGTCCTCAGGTGGGATCTGCAGGGCCCAATCAGCTGTGAGGCTGCGAACAAACTGGAGTCGGATAGCTCCGCCCCCTTCAACCTCACCGTTTACTATGGACCCGAGATGGTCGCCATAGCTCCGCCCACTCCTCCCCAGTTCATCAAAGCCGGTTCTGACTTCAACCTGTCGTGTTCGGCGGAGTCCAGCCCGGCCGCCACCTTCCAGTGGTTCCACAACCAGCAGCTGATGAAGAACTCTGGTCCCACGCTGACGCTGATGAAGATCCAGGAACTCGGGATTGGGGCTGAAGCCGGACAGTTCTCG]
[+] EMBL CA846352 [TTGTAGTCCTATCTGTGGGGCTGGTCTGGCGCCAGCCATCCCATCATGATGGTTGGATCAGCTCATCCATTGAGTTCTGATGGGTCCAAAACACACACCTTCCATCTCTGCGTGGTCTGAGCGGAAGGCGGAGAACCGGTCCAGCAGGTCTGCCGGTTCTGTGCCAGCTTCATTCAGCATTGGTGACTGTTGGTTTTTGGAGCGCGGTTTACGAGGCGCCGGCAGGCTGCTCCAGGCTCCGCCCACATCTTGAAGTCGCCCAACAGTAGCAGCTGCTTGTTTGTTTAACCTGTTTCTGAGGTGACCATCAAGTCCAACCTGGCCGAGGCCATGGAACACAACAGCACCGTGGTTCTAAGCTGCTCCGCCAAAGGCTCCTTCCTCAAGTTCACCTGGACCAACAGAACCAAGCCGCTCATCCCCGATGGTAAAAGGATAACGCTGAAAGAGGAGGAACTGTCCAGTGTCATCACCATCACAGGTGTCCTCAGGTGGGATCTGCAGGGCCCAATCAGCTGTGAGGCTGCGAACAAACTGGAGTCGGATAGCTCCGCCCCCTTCAACCTCACCGTTTACTATGGACCCGAGATGGTCGCCATAGCTCCGCCCACTCCTCCCCAGTTCATCAAAGCCGGTTCTGACTTCAACCTGTCGTGTTCGGCGGAGTCCAGCCCGGCCGCCACCTTCCAGTGGTTCCACAACCAGCAGCTGATGAAGAACTCTGGTCCCACGCTGACGCTGATGAAGATCCAGGAACTCGGGATTGGGGCTGAAGCCGGACAGTTCTCG]
consensusID : consensus_2430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 592 fasta sequence
[CCTCTGCTGGGAACGCTGGATCGTCCGTAATGGATCTGTCCCACTCTCTGCTGGTTCTTCTCTCTTTTCTCGGATTCTATGCGGCTCAGGAAATCCTGCCGGAGGGTCCAGTGGACGTGGTTCTGGGCAAAAACGTGACTCTGCGGACGCTTCTCGTTAAGCCTGAGTACGTGTTTATAGTTTGGACCTATAACGACGGGGCCGATCAGGTGCACGTCGCCACGCTGTCTGAGACCGGACTGAAGCTAAACATTCCGTACGAGGGCCGAGTGTCCGTGGACCCCGACACCGGCAGCCTGTTCCTGGCGGCGGCCAAGGGCAAGGACAGCGGCGACTACGGCATCTCCATCATCTCTAAAGATGGAGGGACGAAAACCGCCGAAATCAAGCTGCGGGTGCTGGAACCTGTTTCTGAGGTGACCATCAAGTCCAACCTGGCCGAGGCCATGGAACACAACAGCACCGTGGTTCTAAGCTGCTCCGCCAAAGGCTCCTTCCTCAAGTTCACCTGGACCAACAGAACCAAGCCGCTCATCCCCGATGGTAAAAGGATAACGCTGAAAGAGGAGGAACTGTCCAGTGTCATCACCAT]
[+] EMBL CA846024 [CCTTAGATGGGAACGCTGGATCGTCCGTAATGGATCTGTCCCACTCTCTGCTGGTTCTTCTCTCTTTTCTCGGATTCTATGCGGCTCAGGAAATCCTGCCGGAGGGTCCAGTGGACGTGGTTCTGGGCAAAAACGTGACTCTGCGGACGCTTCTCGTTAAGCCTGAGTACGTGTTTATAGTTTGGACCTATAACGACGGGGCCGATCAGGTGCACGTCGCCACGCTGTCTGAGACCGGACTGAAGCTAAACATTCCGTACGAGGGCCGAGTGTCCGTGGACCCCGACACCGGCAGCCTGTTCCTGGCGGCGGCCAAGGGCAAGGACAGCGGCGACTACGGCATCTCCATCATCTCTAAAGATGGAGGGACGAAAACCGCCGAAATCAAGCTGCGGGTGCTGGAACCTGTTTCTGAGGTGACCATCAAGTCCAACCTGGCCGAGGCCATGGAACACAACAGCACCGT ]
[+] EMBL CA591100 [ CTCTGCTGGGAACGCTGGATCGTCCGTAATGGATCTGTCCCACTCTCTGCTGGTTCTTCTCTCTTTTCTCGGATTCTATGCGGCTCAGGAAATCCTGCCGGAGGGTCCAGTGGACGTGGTTCTGGGCAAAAACGTGACTCTGCGGACGCTTCTCGTTAAGCCTGAGTACGTGTTTATAGTTTGGACCTATAACGACGGGGCCGATCAGGTGCACGTCGCCACGCTGTCTGAGACCGGACTGAAGCTAAACATTCCGTACGAGGGCCGAGTGTCCGTGGACCCCGACACCGGCAGCCTGTTCCTGGCGGCGGCCAAGGGCAAGGACAGCGGCGACTACGGCATCTCCATCATCTCTAAAGATGGAGGGACGAAAACCGCCGAAATCAAGCTGCGGGTGCTGGAACCTGTTTCTGAGGTGACCATCAAGTCCAACCTGGCCGAGGCCATGGAACACAACAGCACCGTGGTTCTAAGCTGCTCCGCCAAAGGCTCCTTCCTCAAGTTCACCTGGACCAACAGAACCAAGCCGCTCATCCCCGATGGTAAAAGGATAACGCTGAAAGAGGAGGAACTGTCCAGTGTCATCACCAT]
[+] EMBL CA591317 [ CTCTGCTGGGAACGCTGGATCGTCCGTAATGGATCTGTCCCACTCTCTGCTGGTTCTTCTCTCTTTTCTCGGATTCTATGCGGCTCAGGAAATCCTGCCGGAGGGTCCAGTGGACGTGGTTCTGGGCAAAAACGTGACTCTGCGGACGCTTCTCGTTAAGCCTGAGTACGTGTTTATAGTTTGGACCTATAACGACGGGGCCGATCAGGTGCACGTCGCCACGCTGTCTGAGACCGGACTGAAGCTAAACATTCCGTACGAGGGCCGAGTGTCCGTGGACCCCGACACCGGCAGCCTGTTCCTGGCGGCGGCCAAGGGCAAGGACAGCGGCGACTACGGCATCTCCATCATCTCTAAAGATGGAGGAACGAAAACCGCCGAAATCAAGCTGCGGGTGCTGGAACCTGTTTCTGAGGTGACCATCAAGTCCAACCTGGCCGAGGCCATGGAACACAACAGCACCGTGGTTCTAAGCTGCTCCGCCAAAGGCTCCTTCCTCAAGTTCACCTGGACCAACAGAACCAAGCCGCTCATCCCCGATGGTAAAAGGATAACGCTGAAAGAGGAGGAACTGTCCAGTGTCATCACCA ]
[+] EMBL BU805851 [ CTGCTGGGAACGCTGGATCGTCCGTAATGGATCTGTCCCACTCTCTGCTGGTTCTTCTCTCTTTTCTCGGATTCTATGCGGCTCAGGAAATCCTGCCGGAGGGTCCAGTGGACGTGGTTCTGGGCAAAAACGTGACT ]
[+] EMBL FR0061854 [ CTGTCCCACTCTCTGCTGGGGGGGCTCTCTTTTCTCGGATTCTATGCGGCTCAGCAAATCCTGCCGGAGGGTCCAGTGGACGTGGTTCTGGGCAAAAACGTGACTCTGCGGACGCTTCTCGTTAAGCCTGAGTACGTGTTTATAGTTTGGACCTATAACGACGGGGCCGATCAGGTGCACGTCGCCACGCTGTCTGAGACCGGACTGAAGCTAAACATTCCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2430#0 ------------------------------------------------------------
consensus_2430#1 CCTCTGCTGGGAACGCTGGATCGTCCGTAATGGATCTGTCCCACTCTCTGCTGGTTCTTC 60
consensus_2430#0 ---------------------------TTGTAGTCCTATCTGTGGGGCTGGTCTGGCGCC 33
consensus_2430#1 TCTCTTTTCTCGGATTCTATGCGGCTCAGGAAATCCTGCCGGAGGGTCCAGTG-GACGTG 119
* * **** * * *** * ** * **
consensus_2430#0 AGCCATCCCATCATGATGGTTGGATCAGCTCATCCATTGAGTTCTGA---TGGGTCCAAA 90
consensus_2430#1 GTTCTGGGCAAAAACGTGACTCTGCGGACGCTTCTCGTTAAGCCTGAGTACGTGTTTATA 179
* ** * ** * * * ** * * **** * ** * *
consensus_2430#0 ACACACACCTTCCATCTCTGCGTGGTCTGAGCGGAAGGCGGAGAACCGGTCCAG-CAGGT 149
consensus_2430#1 GTTTGGACCTATAACGACGGGGCCGATCAGGTGCACGTCGCCACGCTGTCTGAGACCGGA 239
**** * * * * * * * * * ** * * ** * **
consensus_2430#0 CTGCCG------GTTCTGTGCCAGCTTCATTCAGCATTGG----------TGACTGTTGG 193
consensus_2430#1 CTGAAGCTAAACATTCCGTACGAGGGCCGAGTGTCCGTGGACCCCGACACCGGCAGCCTG 299
*** * *** ** * ** * * *** * * * *
consensus_2430#0 TTTTTGGAGCGCGGTTTACGAGGCGCCGGCAGGCTGCTCCAGGCTCCGC-CCACATCTTG 252
consensus_2430#1 TTCCTGGCG-GCGGCCAAGGGCAAGGACAGCGGCGACTACGGCATCTCCATCATCTCTAA 358
** *** * **** * * * *** ** * * ** * ** ***
consensus_2430#0 AAGTCGCCCAACAGTAGCAGCTGC-------TTGTTTGTTT---AACCTGTTTCTGAGGT 302
consensus_2430#1 AGATGGAGGGACGAAAACCGCCGAAATCAAGCTGCGGGTGCTGGAACCTGTTTCTGAGGT 418
* * * ** * * ** * ** ** ****************
consensus_2430#0 GACCATCAAGTCCAACCTGGCCGAGGCCATGGAACACAACAGCACCGTGGTTCTAAGCTG 362
consensus_2430#1 GACCATCAAGTCCAACCTGGCCGAGGCCATGGAACACAACAGCACCGTGGTTCTAAGCTG 478
************************************************************
consensus_2430#0 CTCCGCCAAAGGCTCCTTCCTCAAGTTCACCTGGACCAACAGAACCAAGCCGCTCATCCC 422
consensus_2430#1 CTCCGCCAAAGGCTCCTTCCTCAAGTTCACCTGGACCAACAGAACCAAGCCGCTCATCCC 538
************************************************************
consensus_2430#0 CGATGGTAAAAGGATAACGCTGAAAGAGGAGGAACTGTCCAGTGTCATCACCATCACAGG 482
consensus_2430#1 CGATGGTAAAAGGATAACGCTGAAAGAGGAGGAACTGTCCAGTGTCATCACCAT------ 592
******************************************************
consensus_2430#0 TGTCCTCAGGTGGGATCTGCAGGGCCCAATCAGCTGTGAGGCTGCGAACAAACTGGAGTC 542
consensus_2430#1 ------------------------------------------------------------
consensus_2430#0 GGATAGCTCCGCCCCCTTCAACCTCACCGTTTACTATGGACCCGAGATGGTCGCCATAGC 602
consensus_2430#1 ------------------------------------------------------------
consensus_2430#0 TCCGCCCACTCCTCCCCAGTTCATCAAAGCCGGTTCTGACTTCAACCTGTCGTGTTCGGC 662
consensus_2430#1 ------------------------------------------------------------
consensus_2430#0 GGAGTCCAGCCCGGCCGCCACCTTCCAGTGGTTCCACAACCAGCAGCTGATGAAGAACTC 722
consensus_2430#1 ------------------------------------------------------------
consensus_2430#0 TGGTCCCACGCTGACGCTGATGAAGATCCAGGAACTCGGGATTGGGGCTGAAGCCGGACA 782
consensus_2430#1 ------------------------------------------------------------
consensus_2430#0 GTTCTCG 789
consensus_2430#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |