These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [CTGTGGAACAACACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGCCAGCAAACTGAAGGAGAAGTACGAGAAGGACGTTGCTGCCTATCGCCAGAAGACCAAGGGGGGCTCCGGGTCGGCGGGAAAGGCCCCGGCCAAGGTGGAAAAGAAGGCCGAGGATGACGACGACGACGAGGACGAAGACGAGGACGAGGACGACGACGACGAGGATGAGGAGTAGATGGCGAGTGACATCGTGGTCATTTTCTTGTTTATAAAGCATTTAGCCCCCTTGTACACTCTCACTTACTGAAAGGAAATACATTAGTAAAGGGGTGACCCAGAAAGGCTGTGTATATCAGTTGTTTTTAGTGCTGTACAGTTTTCGTTCCTCTTCGTTTTGTGGAGGTAAGACTACACAAGTGTCGTGTCCGTATCTTTCCGCCAGTCTGAATTCCAGTGACAGTCTCTAGACCGCTGTCCTGCCTGGGACAGTGTAAAGGGGGGGGGGCTTTTAATATTTACCCTAGTTAGACGTGCACAGCACATAAGCCTTC] [+] EMBL CA845205 [CTGTGGAACAACACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGCCAGCAAACTGAAGGAGAAGTACGAGAAGGACGTTGCTGCCTATCGCCAGAAGACCAAGGGGGGCTCCGGGTCGGCGGGAAAGGCCCCGGCCAAGGTGGAAAAGAAGGCCGAGGATGACGACGACGACGAGGACGAAGACGAGGACGAGGACGACGACGACGACGATGACGAGTAGATGGCGAGTGACATCGTGGTCATTTTCTTGTTTATAAAGCATTTAACCCCCTTGTACACTCTCACTTACTGAAAGGAAATACATTAGTAAAGGGGTGACCCAGAAAGGCTGTGTATATCAGTTGTTTTTA TGCTGTACAGTTTTCGTTCCTCTTCTTTTTGTATAGGTAACACTACACAAGTGTCGTGTCCGTATCTTTCCGCCAGTCTTATTTCCAGTGATAGTCTCTAGACCGCTATCCTGCCTGGTACAGTGTAAAGGGGGGGGGGCTTTTAATATTTACCCTAGTTAGACGTGCACAGCACATAAGCCTTC] [+] EMBL FR0056769 [ GTCGGCGGGAAAGGCCCCGGCCAAGGTGGAAAAGAAGGCCGAGGATGACGACGACGACGAGGACGAAGACGAGGACGAGGACGACGACGACGAGGATGAGGAGTAGATGGCGAGTGACATCGTGGTCATTTTCTTGTTTATAAAGCATTTAGCCCCCTTGTACACTCTCACTTACTGAAAGGAAATACATTAGTAAAGGGGTGACCCAGAAAGGCTGTGTATATCAGTTGTTTTTAGTGCTGTACAGTTTTCGTTCCTCTTCGTTTTGTGGAGGTAAGACTACACAAGTGTCGTGTCCGTATCTTTCCGCCAGTCTGAATTCCAGTGACAGTCTCTAGACCGTTGTCCTGCCTGGGACA ] consensusID : consensus_2432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 526 fasta sequence [CATTGAGATCCAGCCTGAGTCCCTTGCCTTCAAGATGGGGAGAGATTCGGGGAGAGAAGCGGGAAAGCCTCGTGGCAAGATGTCCTCTTATGCATTTTTTGTCCAAACCTGTCGTGAAGAGCACAAGAAGAAGCACCCCGATGCTTCGGTTAACTTCTCGGAGTTCTCCA-GGAAGTGTTCTGAGCGATGGAAGACCATGTCTGTCAAGGAGAAGGGCAAGTTTGAGGACTTGGCCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAAGGAGGCAAGAAGAAGAAGAAGTTCAAGGACCCCAATGCCCCCAAGAGACCCCCATCCGCCTTCTTCATTTTCTGCTCAGAGTTTCG-CCCGAAGGTGAAGGGGGAGCACCCTGGTCTGACCATCGGGGAGGGGCGCAAGAAGCTGGGCGAGCTGTGGCATAGCACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGGCAGCAATCTGAAGGAGTCGTACGAGAAGGACGTTGCT] [+] EMBL BU805806 [CATTGAGATCCAGCCTGAGTCCCTTGCCTTCAAGATGGGGAGAGATTCGGGGAGAGAAGCGGGAAAGCCTCGTGGCAAGATGTCCTCTT ] [+] EMBL FR0063050 [ CTTGCCTTCAAGATGGGGAGAGATTCGGGGAGAGAAGCGGGAAAGCCTCGTGGCAAGATGTCCTCTTATGCATTTTTTGTCCAAACCTGTCGTGAAGAGCACAAGAAGAAGCACCCCGATGCTTCGGTTAACTTCTCGGAGTTCTCCA GGAAGTGTTCTGAGCGATGGAAGACCATGTCTGTCAAGGAGAAGGGCAAGTTTGAGGACTTGGCCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAAGGAGGCAAGAAGAAGAAGAAGTTCAAGGACCCCAATGCCCCCAAGAGACCCCCATCCGCCTTCTTCATTTTCTGCTCAGAGTTTCG CCCGAAGGTGAAGGGGGAGCACCCTGGTCTGACCATCGGGGAGGGG ] [+] EMBL FR0062307 [ AGAGAAGCGTGAAAGCCTCGTGGCAAGATGTCCTCTTATGCATTTTTTGTCCAAACCTGTCGTGAAGAGCACAAGAAGAAGCACCCCGATGCTTCGGTTAACTTCTCGGAGTTCTCCA GGAAGTGTTCTGAGCGATGGAAGACCATGTCTGTCAAGGAGAAGGGCAAGTTTGAGGACTTGGCCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAAGGAGGCAAGAAGAAGAAGAAGTTCAAGGACCCCAATGCCCCCAAGAGACCCCCATCCGCCTTCTTCATTTTCTGCTCAGAGTTTCGCCCCGAAGTAGAAGGGGGAGCACCC ] [+] EMBL FR0055578 [ GTCCAAACCTGTCGTGAACGAGACAAGATGTCGCACCACGATGCTTCGGTTAACTTCTCGCAGTTCTCCACAGAAGTGTTCTGAGCGATGGGAGACCATGTCTGTCACGGAGATCGCCAAGTTTGAGGACTTGGGCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAAGGAGGCAAGAAGAAGAAGAAGTTCAAGGACCCCAATGTCCCCAAGAGACCCCCATCCGCCTTCTTCATTTTCTGCTCAGAGTTTCG CCCGAAGGTGAAGGGAGAGCACCCTGGTCTGACCATCGCAGAGGTGCGCAAGAAGCTGGGCGAGCTGTGGCATAGCACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGGCAGCAATCTGAAGGAGTCGTACGAGAAGGACGTTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2432#0 ---------CTGTGGAACAACACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGCC 51 consensus_2432#1 CATTGAGATCCAGCCTGAGTCCCTTGCCTTCAAGATGGGGAGAGATTCGGGGAGAGAAGC 60 * * * * * *** * ** * ** * *** * consensus_2432#0 AGCAAA--CTGAAGG--AGAAGTACGAGAAGGACGTTGCTGCCTA---TCGCCA-GAAGA 103 consensus_2432#1 GGGAAAGCCTCGTGGCAAGATGTCCTCTTATGCATTTTTTGTCCAAACCTGTCGTGAAGA 120 * *** ** ** *** ** * * * ** ** * * * * ***** consensus_2432#0 CCAAGGGGGGCTCCGGGTCGGCGGGAAAGGCCCCGGCCAAGGTGGAAAAGAAGGCCGAGG 163 consensus_2432#1 GCACAAGAAGAAGCACCCCGATG-------CTTCGGTTAACTTCTCGGAGTTCTCCAGGA 173 ** * * * ** * * *** ** * ** ** * consensus_2432#0 ATGACGACGACGACGAGGACGAAGACGAGGAC-GAGGACGACGACGACGAGGATGAGGAG 222 consensus_2432#1 AGTGTTCTGA--GCGATG--GAAGACCATGTCTGTCAAGGAGAAGGGCAAGTTTGAGGAC 229 * ** *** * ****** * * * * * ** * * * ** ****** consensus_2432#0 TAGATGGCGAGTGACATCGTGGTCATTTTCTTGTTTATAAAGCATTTAGCCCCCTTGTAC 282 consensus_2432#1 TTGGCCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAA 289 * * * **** ** * * * ** * * * * * *** * consensus_2432#0 ACTCTCACTTACTGAAAGGAAATACATTAGTAAAGGGGTGACCCAGAAAGGCTGTGTATA 342 consensus_2432#1 GGAGGCA---AGAAGAAGAAGAAGTTCAAGGACCCCAATGCCCCCAAGAGACCCC---CA 343 ** * *** * * ** * ** *** * ** * * consensus_2432#0 TCAGTTGTTTTTAGTG-CTGTACAGTTTTCGTTCCTCTTCGTTTTGTGGAGGTAAGACTA 401 consensus_2432#1 TCCGCCTTCTTCATTTTCTGCTCAGAGTTT-CGCCCGAAGGTGAAGGGGGAGCACCCTGG 402 ** * * ** * * *** *** ** ** ** * ** * * consensus_2432#0 CACAAGTGTCGTGTCCGTATCTTTCCGCCAGTCTGAATTCCAGTGACAGTCTCTAGACCG 461 consensus_2432#1 TCTGACCATCGGGGAGGGGCGCAAGAAGCTGGGCGAGCTGTGGC-ATAGCACCAACTCGG 461 * *** * * * * ** * * * ** * * * * consensus_2432#0 CTGTCCTGCCTGGGACAGTGTAAAGGGGGGGGGGCTTTTAATATTTACCCTAGTTAGACG 521 consensus_2432#1 AGGATAAGCAGCCGTACGAGAAGAAGGGCAGCAATCTGAAGGAGTCGTACGAGAAGGACG 521 * ** * * * * * *** * * * * * * ** **** consensus_2432#0 TGCACAGCACATAAGCCTTC 541 consensus_2432#1 TTGCT--------------- 526 * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |