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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 525 fasta sequence
[ATCGCTCTCACTCTCAAAGGTTTGTGACCCATTATGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGGCCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGGCCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA]
[+] EMBL CA844867 [ATCGCTCTCACTCTCAAAGGTTTG GACCCATT TGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGGCCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGGCCACGGCCATGGGGGCTACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCA ]
[+] EMBL CA846904 [ CTCTCACTCTCAAAGGTTTGTGACCCATTAAGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGGCCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGGCCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTATATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGACCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGG ]
[+] EMBL CA846901 [ caTTTGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGGCCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGGCCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAATACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCC ]
[+] EMBL CA846588 [ GGGGCCACGGGGGCCAC GGGGGCCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA]
consensusID : consensus_2438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 437 fasta sequence
[AGAGTTCATCGCTCTCACTCTCAAAGGTTTGGACCCATTTGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA]
[+] EMBL CA844870 [AGAGTTCATCGCTCTCACTCTCAAAGGTTTGGACCCATTTGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA]
[+] EMBL CA844915 [AGAGTTCATCGCTCTCACTCTCAAAGGTTTGGACCCATTTGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2438#0 -------ATCGCTCTCACTCTCAAAGGTTTGTGACCCATTATGAAATCTGAACATCTCAA 53
consensus_2438#1 AGAGTTCATCGCTCTCACTCTCAAAGGTTTG-GACCCATT-TGAAATCTGAACATCTCAA 58
************************ ******** *******************
consensus_2438#0 CTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGG 113
consensus_2438#1 CTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGG------------ 106
************************************************
consensus_2438#0 CCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGG 173
consensus_2438#1 ------------------------------------------------------------
consensus_2438#0 CCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTG 233
consensus_2438#1 ---------------------GGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTG 145
***************************************
consensus_2438#0 CCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCA 293
consensus_2438#1 CCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCA 205
************************************************************
consensus_2438#0 CAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTC 353
consensus_2438#1 CAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTC 265
************************************************************
consensus_2438#0 AGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCAT 413
consensus_2438#1 AGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCAT 325
************************************************************
consensus_2438#0 CTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATC 473
consensus_2438#1 CTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATC 385
************************************************************
consensus_2438#0 TGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA 525
consensus_2438#1 TGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA 437
****************************************************
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |