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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 627 fasta sequence
[GAAACTACAGAGATCCAATATTCAAGTGCCGATTAAGATGTCAGAGACTCTGTACGACGGCTTCGATAAGCTCGGAAAGAAGCAGAACAAGGAGC-AGGTTCCACCAGCAGGCGATCCACAAAAGAAGAAACCCTCAACAAATAAAGCCTCCAAGACTTCGAGCACCAGCAACACGGTCACCCGAGAGACTCACAAGAACCTGGCAGAAGCCTTTAAAGCTTTGGATGTTGGAGACCTCAAGCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCAGAAAACCCCTCAGTGTGGCTCAAAGACCTGGCAGGATACCTAAACCTCAACCTGGTGGCACCGGACACTGGGCCCACCCTCACAAACCACCCTCATGACTACCCTTACTGCCTGACTGGGAAGGAGCTGAAAGGCATTATTAAGGGTTTAATCGGACGCTGCGCTGCCATCCTGCCAGATTTATTGGACCACTGTGTTTATACTATGCTCAGGGAACTGGACAGACAGTCAGGGGAACCTCTGCATGGCTACCGAGTTTGTATTCAGGCAATCCTACAGGACAAACCTAAAATAGCCACTCAGAACCTGCCGGAGTATCTGGAGCTCCTGCGGACAGTCCAGAATCGTCCTGT]
[+] EMBL BU807510 [GAAACTACAGAGATCCAATATTCAAGTGCCGATTAAGATGTCAGAGACTCTGTACGACGGCTTCGATAAGCTCGGAAAGAAGCAGAACAAGGAGC AGGTTCCACCAGCAGGCGATCCACAAAAGAAGAAACCCTCAACAAATAAAGCCTCCAAGACTTCGAGCACCAGCAACACGGTCACCCGAGAGACTCACAAGAACCTGGCAGAAGCCTTTAAAGCTTTGGATGTTGGAGACCTCAAGCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCAGAAAACCCCTCAGTGTGGTTCAAAGACCTGGCAGGATACCTAAACCTCAACCTGGTGGCACCGGACACTGGGCCCACCCTCACAAACCACCCTCATGACTACCCTTACTGCCTGACTGGGAAGGAGCTGAAAGGCATTATTAAGGGTTTAATCGGACGCTGCGCTGCCATCCTGCCAGATTTATTGGACCACTGTGTTTATACTATGCTCAGGGAACTGGACAGACAGTCAGGGGAACCTCTGCATGGCTACCGAGTTTGTATTCAGGCAATCCTACAGGACAAACCTAAAATAGCCACTCAGAACCTGCCGGAGTATCTGGAGCTCCTGCGGACAGTCCAGAATCGTCCTGT]
[+] EMBL BU805647 [ TACGACGGCTTCGATAAGCTTTTACCCAA AAGAAGGAGGAGC AGGTTCCACCAGCAGGCGATCCACAAAAGAAGAAACCCTCAACAAATAAAGCCTCCAAGACTTCGAGCACCAGCAACACGGTCACCCGAGAGACTCACAAGAACCTGGCAGAAGCCTTTAAAGCTTTGGATGTTGGAGACCTCAAGCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCATATTTTTCCTCAGTGTGGTTCAAAGACCTGGCAGGATACCTAAACCTCAACCTGGTGGCACCGGACACTGGGCCCACCCTCACAAACCACCCTCATGACTACCCTTACTGC ]
[+] EMBL FR0060709 [ tCTCGGAAAGAAGCAGAACAAGGAGCGGGGCTCCACCAGCAGGCGATCCACAAAAGAAGAAACCCTCAACAAATAAAGCCTCCAAGACTTCGAGCACCAGCAACACGGTCACCCGAGAGACTCACAAGAACCTGGCAGAAGCCTTTAAAGCTTTGGATGTTGGAGACCTCAAGCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCAGAAAACCCCTCAGTGTGGCTCAAAGACCTGGCAGGATACCTAAACCTCAACCTGGGGGCACCAGACACTGGGCCCACCCTCACAAACCACCCTCATGACTACCCTTACTGCCTGACTGGGAAGG GCTG ]
[+] EMBL FR0060699 [ CCGGGAGCAGTCTATCCACAAAGNAAGAAACCCTCAACAAATAAAGCCTCCAAGACTTCGAGCACCAGCAACACGGTCACCCGAGAGACTCACAAGAACCTGGCAGAAGCCTATAAAGCTTTGGATGTTGGAGACCTCAAGCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCAGAAAACCCCTCAGTGTGGCTCAAAGACCTGGCAGGATACCTAAACCTCAACCTGGTGGCACCGGACACTGGGCCCACCCTCACAAACCACCCTCATGACTACCCTTACTGCCTGACTGGGAAGGA ]
consensusID : consensus_2439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence
[TGTGTGAACTCCTGTCTTCTCTCTCGCTTCCTCTCATAGTTGGATGTTGGAGACCTCAAGCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCAGAAAACCCCTCAGTGTGGTTCAAAGACCTGGCAGGATACCTAAACCTCAACCTGGTGGCACCGGACACTGGGCCCACCCTCACAAACCACCCTCATGACTACCCTTACTGCCTGACTGGGAAGGAGCTGAAAGGCATTATTAAGGGTTTAATCGGACGCTGCGCTGCCATCCTGCCAGATTTATTGGACCACTGTGTTTATACTATGCTCAGGGAACTGGACAGACAGTCAGGGGAACCTCTGCATGGCTACCGAGTTTGTATTCAGGCAATCCTACAGGACAAACCTAAAATAGCCACTCAGAACCTGCCGGAGTATCTGGAGCTCCTGCGGACAGTCCAGAATCGTCCCGTGAAGGGTTTGACCGTCATGTGGGCTCTCGGCCAAGCTGGGTTTTACGATCTCAGCCAGGGGCTGCGAGTGTGGTTGGGGATCATGCTTCCTGTGCTGGGGGTCAAGTCCCTGTCAGCTTACGCCATTGCTTAT]
[+] EMBL CA590300 [TGTGTGAACTCCTGTCTTCTCTCTCGCTTCCTCTCATAGTTGGATGTTGGAGACCTCAAGCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCAGAAAACCCCTCAGTGTGGTTCAAAGACCTGGCAGGATACCTAAACCTCAACCTGGTGGCACCGGACACTGGGCCCACCCTCACAAACCACCCTCATGACTACCCTTACTGCCTGACTGGGAAGGAGCTGAAAGGTATTATTAAGGGTTTAATCGGACGCTGCGCTGCCATCCTGCCAGATTTATTGGACCACTGTGTTTATACTATGCTCAGGGAACTGGACAGACAGTCAGGGGAACCTCTGCATGGCTACCGAGTTTGTATTCAGGCAATCCTACAGGACAAACCTAAAATAGCCACTCAGAACCTGCCGGAGTATCTGGAGCTCCTGCGGACAGTCCAGAATCGTCCTGTGAAGGGTTTGACCGTCATGTGGGCTCTCGGCCAAGCTGGGTTTTACGATCTCCGCCAGGGGCTG ]
[+] EMBL CA590462 [ TGTCTTCTCTCTCGCTTCCTCTCATAGTTGGATGTTGGAGACCTCAAGCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCAGAAAACCCCTCAGTGTGGTTCAAAGACCTGGCAGGATACCTAAACCTCAACCTGGTGGCACCGGACACTGGGCCCACCCTCACAAACCACCCTCATGACTACCCTTACTGCCTGACTGGGAAGGAGCTGAAAGGCATTATTAAGGGTTTAATCGGACGCTGCGCTGCCATCCTGCCAGATTTATTGGACCACTGTGTTTATACTATGCTCAGGGAACTGGACAGACAGTCAGGGGAACCTCTGCATGGCTACCGAGTTTGTATTCAGGCAATCCTACAGGACAAACCTAAAATAGCCACTCAGAACCTGCCGGAGTATCTGGAGCTCCTGCGGACAGTCCAGAATCGTCCCGTGAAGGGTTTGACCGTCATGTGGGCTCTCGGCCAAGCTGGGTTTTACGATCTCAGCCAGGGGCTGCGAGTGTGGTTGGGGATCATGCTTCCTGTGCTGGGGGTCAAGTCCCTGTCAGCTTACGCCATTGCTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2439#0 GAAACTACAGAGATCCAATATTCAAGTGCCGATTAAGATGTCAGAGACTCTGTACGACGG 60
consensus_2439#1 ------------------------------------------------------------
consensus_2439#0 CTTCGATAAGCTCGGAAAGAAGCAGAACAAGGAGCAGGTTCCACCAGCAGGCGATCCACA 120
consensus_2439#1 ------------------------------------------------------------
consensus_2439#0 AAAGAAGAAACCCTCAACAAATAAAGCCTCCAAGACTTCGAGCACCAGCAACACGGTCAC 180
consensus_2439#1 ------------------------------------------------------------
consensus_2439#0 CCGAGAGACTCACAAGAACCTGGCAGAAGCCTTTAAAGCTTTGGATGTTGGAGACCTCAA 240
consensus_2439#1 -TGTGTGAACTCCTGTCTTCTCTCTCGCTTCCTCTCATAGTTGGATGTTGGAGACCTCAA 59
* * ** * ** * * * * ********************
consensus_2439#0 GCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCAGAAAACCCCTCAGTGTGGCTCAAAGA 300
consensus_2439#1 GCAGCAGTTGGCTCACAGTCAAACCCTGTTTCCAGAAAACCCCTCAGTGTGGTTCAAAGA 119
**************************************************** *******
consensus_2439#0 CCTGGCAGGATACCTAAACCTCAACCTGGTGGCACCGGACACTGGGCCCACCCTCACAAA 360
consensus_2439#1 CCTGGCAGGATACCTAAACCTCAACCTGGTGGCACCGGACACTGGGCCCACCCTCACAAA 179
************************************************************
consensus_2439#0 CCACCCTCATGACTACCCTTACTGCCTGACTGGGAAGGAGCTGAAAGGCATTATTAAGGG 420
consensus_2439#1 CCACCCTCATGACTACCCTTACTGCCTGACTGGGAAGGAGCTGAAAGGCATTATTAAGGG 239
************************************************************
consensus_2439#0 TTTAATCGGACGCTGCGCTGCCATCCTGCCAGATTTATTGGACCACTGTGTTTATACTAT 480
consensus_2439#1 TTTAATCGGACGCTGCGCTGCCATCCTGCCAGATTTATTGGACCACTGTGTTTATACTAT 299
************************************************************
consensus_2439#0 GCTCAGGGAACTGGACAGACAGTCAGGGGAACCTCTGCATGGCTACCGAGTTTGTATTCA 540
consensus_2439#1 GCTCAGGGAACTGGACAGACAGTCAGGGGAACCTCTGCATGGCTACCGAGTTTGTATTCA 359
************************************************************
consensus_2439#0 GGCAATCCTACAGGACAAACCTAAAATAGCCACTCAGAACCTGCCGGAGTATCTGGAGCT 600
consensus_2439#1 GGCAATCCTACAGGACAAACCTAAAATAGCCACTCAGAACCTGCCGGAGTATCTGGAGCT 419
************************************************************
consensus_2439#0 CCTGCGGACAGTCCAGAATCGTCCTGT--------------------------------- 627
consensus_2439#1 CCTGCGGACAGTCCAGAATCGTCCCGTGAAGGGTTTGACCGTCATGTGGGCTCTCGGCCA 479
************************ **
consensus_2439#0 ------------------------------------------------------------
consensus_2439#1 AGCTGGGTTTTACGATCTCAGCCAGGGGCTGCGAGTGTGGTTGGGGATCATGCTTCCTGT 539
consensus_2439#0 ----------------------------------------
consensus_2439#1 GCTGGGGGTCAAGTCCCTGTCAGCTTACGCCATTGCTTAT 579
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |