These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 590 fasta sequence [CCATGGCTGAGAGACGCATTCCCTTCACCTTGCTCCGGAGCCCCAGC-TGGGATCCAT-TCCGCGACTGGCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCA-TGTCGGAGATCAAGCAGACCCCAGAATCCTGGAAGGTGTC-TCTGGACGTGAATCACTTCTCACCAGAGGAGC-TGGTGGTGAAGACCAAAGACGGAATGGTGGAAATCACTGGCAAGCATGAAGAGAAGAAGGACGAA-CATGGATTTGTGTCCAGAACCTTCACAAGGAAATACACGCTCCCCTCTACAGCCAATACTGAGAAGGTAACTTCCTCCCTGTCTCCTGATGGGGTCCTCACTGTGGAAGCCCCTCTGAAAGTGGCAGCCATTGAGGCTTCCGAGACATCCATACCTGTCACTGTGGACAAGAAGGCT] [+] EMBL BU805524 [CCATGGCTGAGAGACGCATTCCCTTCACCTTGCTCCGGAGCCCCAGC TGGGATCCAT TCCGCGACTGGCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCA TGTCGGAGATCAAGCAGACCCCAGAATCCTGGAAGGTGTC TCTGGACGTGAATCACTTCTCACCAGAGGAGC TGGTGGTGAAGACCAAAGACGGAATGGTGGAAATCACTGGCAAGCATGAAGAGAAGAAGGACGAA CATGGATTTGTGTCCAGAACCTTCACAAGGAAATACACGCTCCCCTCTACAGCCAATACTGAGAAGGTAACTTCCTCCCTGTCTCCTGATGGGGTCCTCACTGTGGAAGCCCCTCTGAAAGTGGCAGCCATTGAGGCTTCCGAGACATCCATACCTGTCACTGTGGACAAGAAGGCT] [+] EMBL FR0062717 [ CTGAGAGACGCATTTCCTTCACCTTGCTCCGGAGCCCCAGCGTGGGATCCAT TCCGCNACTGTCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGCGTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGCGGCATTGTCGGAGATCAAGCAGACCCCAGAATCTTGGAAGGTGCCTTCTGGACGTGAATCACTTCTCACCAGAGGAGCTTGGCGGTGAAGACCAAAGACGGAATGGGGGAAAGCACTGGCAAGCATGAGGAGAGGAAGGACGAACCATGGTTTTGTGTCCAGAACCTTC ] [+] EMBL FR0062450 [ aCTGAGAGACGCATTCCCTTCACCTTGTTCCGGAGCCCCAGC TGTGATCCATGGGCGCGACTGGCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCA TGTCGGAGATCAAGCAGACCCCAGAATCCTGGAAGGAGGC TCTGGACGTGAATCACTTCTCACCAGAGGAGC TGGTGGTGAAGACCAAAGACGGAATGGTGGAAAACACTTGGCAGCATGAAGAG ] [+] EMBL FR0062668 [ CTGGAGCCCCAGC TGGGATCCAT TCCGCGACTGNCACCACCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGCTTTGTGATGCCCCATGGGATGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGAGGCA TGTCGGAGAGGAAGCAGACCCCAGAATCCTGGAAGGTGTC TCTGGGCGGGAATCACTTCTCACCAGAGGAGC TGGTGGTGAAGACCAAAGACGGg ] [+] EMBL FR0062903 [ TTTGACCAGGCTTTTGGGATGCCGGTTCTGGGGGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGAGTTTTGTGATGCCCCATGGGATGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCATTGTCGGAGATCAAGCAGACCCCAGAATTCGTGAAGGGGTC TCTGGACGTGAATCACTTCTCACCAGAGGAGC TGGTGGTGAAGACCAAAGACGTAATGGTGGAAATCACTTGCACGCATGAAGAGAAGAAGGACGAC CATGGATTTGGTGCCAGAACCTTCACAAGGAATTACAC ] consensusID : consensus_2442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [TCCGNANCCCCATCTTTGATCCATTCCGCGACTGGCACCAGCGACACTTAATCTTTGACCACNCTTTTGCCATCCGTTTCTGCCCGATTACATNATCACATTTCCCAACACCCACTTGGCCGTGTATATAAGGCCCTCCATCCTGGCCCCTGATATGTGTTGTGTGATGCCCTATGGGTTGTACCCAAGAGCCACAATGGCTCAGCAGGCCCGTGCACT] [+] EMBL FR0062567 [TCCGNANCCCCATCTTTGATCCATTCCGCGACTGGCACCAGCGACACTTAATCTTTGACCACNCTTTTGCCATCCGTTTCTGCCCGATTACATNATCACATTTCCCAACACCCACTTGGCCGTGTATATAAGGCCCTCCATCCTGGCCCCTGATATGTGTTGTGTGATGCCCTATGGGTTGTACCCAAGAGCCACAATGGCTCAGCAGGCCCGTGCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2442#0 CCATGGCTGAGAGACGCATTCCCTTCACCTTGCTCCGGAGCCCCAGCTGGGATCCATTCC 60 consensus_2442#1 ---------------------------------TCCGNANCCCCATCTTTGATCCATTCC 27 **** * ***** ** ********** consensus_2442#0 GCGACTGGCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCG 120 consensus_2442#1 GCGACTGGCACCAGCGACACTTAATCTTTGACCACNCTTTTGCCAT-CCGTTTCTGCCCG 86 *************** * ************ ****** ** *** ********* consensus_2442#0 AGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGG 180 consensus_2442#1 ATTACATNATCACATTTCCCAACACCCACTTGGCCGTGTATATAAGGCCCTCCATCCTGG 146 * **** * ******************** * *** *********************** consensus_2442#0 CCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGC 240 consensus_2442#1 CCCCTGATATGTGTTGTGTGATGCCCTATGGGTTGTACCCAAGAGCCACAATGGCTCAGC 206 *********** *** ********** ************** ****************** consensus_2442#0 AGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCATGTCGGAGATCAAGCAGACCCCAG 300 consensus_2442#1 AGGCCCGTGCACT----------------------------------------------- 219 ************* consensus_2442#0 AATCCTGGAAGGTGTCTCTGGACGTGAATCACTTCTCACCAGAGGAGCTGGTGGTGAAGA 360 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 CCAAAGACGGAATGGTGGAAATCACTGGCAAGCATGAAGAGAAGAAGGACGAACATGGAT 420 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 TTGTGTCCAGAACCTTCACAAGGAAATACACGCTCCCCTCTACAGCCAATACTGAGAAGG 480 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 TAACTTCCTCCCTGTCTCCTGATGGGGTCCTCACTGTGGAAGCCCCTCTGAAAGTGGCAG 540 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 CCATTGAGGCTTCCGAGACATCCATACCTGTCACTGTGGACAAGAAGGCT 590 consensus_2442#1 -------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |