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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 635 fasta sequence
[CACTGGCCACAGTCTCCGGCGCTGTGTTGCTGGCTACCTCACTGGAGTATAACATGGAGCTTCCTCAGCTGGAGCGCGTGAGACTCCGCAGGTGTGACAGTGCAGCATCAGTTCCTCAGTTCTGTAACTCTCCCACGATGATTGTGATGGTGGGCCTGCCAGCCCGAGGGAAGACCTACATCTCCAAGAAGCTCACCCGTTACCTGAACTGGATCGGCGTGCCCACAAAAATGTTCAACGTGGGCCAGTACCGCCGGGAGGCCGTCAAGATCTACGAGAACTTTGAGTTCTTTAAACCTGATAACGAGGGGGCCATGAGGATCCGCAAGGCCTGTGCAGCTGCCGCCCTCAAAGACGTCGCCGCCTACTTCACCAAGGAGCAGGGACAAGTGGCTGTGTTCGATGCTACCAACACCACCCGAGAGAGGCGGACAATCATCCTCACCTTTGCAAAAGAGAGGGGCTACAAAGTTTTCTTTGTGGAATCAATCTGTGATGACCCGGAAATCATCGCAGAGAACATCAGGCAAGTTAAATCTGGGAGTCCGGATTACGCAGATCGCGACGTTGAGGAGGCCATGGAGGATTTCATCCAGCGGATCGAGTGCTATAAATCCAGCTACATGCCTATAGAT]
[+] EMBL BU804631 [CACTGGCCACAGTCTCCGGCGCTGTGTTGCTGGCTACCTCACTGGAGTATAACATGGAGCTTCCTCAGCTGGAGCGCGTGAGACTCCGCAGGTGTGACAGTGCAGCATCAGTTCCTCAGTTCTGTAACTCTCCCACGATGATTGTGATGGTGGGCCTGCCAGCCCGAGGGAAGACCTACATCTCCAAGAAGCTCACCCGTTACCTGAACTGGATCGGCGTGCCCACAAAAATGTTCAACGTGGGCCAGTACCGCCGGGAGGCCGTCAAGATCTACGAGAACTTTGAGTTCTTTAAACCTGATAACGAGGGGGCCATGAGGATCCGCAAGGCCTGTGCAGCTGCCGCCCTCAAAGACGTCGCCGCCTACTTCACCAAGGAGCAGGGACAAGTGGCTGTGTTCGATGCTACCAACACCACCCGAGAGAGGCG ]
[+] EMBL BU805309 [ TGCTGGCTACCTCACTGGAGTATAACATGGAGCTTCCTCAGCTGGAGCGCGTGAGACTCCGCAGGTGTGACAGTGCAGCATCAGTTCCTCAGTTCTGTAACTCTCCCACGATGATTGTGATGGTGGGCCTGCCAGCCCGAGGGAAGACCTACATCTCCAAGAAGCTCACCCGTTACCTGAACTGGATCGGCGTGCCCACAAAAATGTTCAACGTGGGCCAGTACCGCCGGGAGGCCGTCAAGATCTACGAGAACTTTGAGTTCTTTAAACCTGATAACGAGGGGGCCATGAGGATCCGCAAGGCCTGTGCAGCTGCCGCCCTCAAAGACGTCGCCGCCTACTTCACCAAGGAGCAGGGACAAGTGGCTGTGTTCGATGCTACCAACACCACCCGAGAGAGGCGGACAATCATCCTCACCTTTGCAAAAGAGAGGGGCTACAAAGTTTTCTTTGTGGAATCAATCTGTGATGACCCGGAAATCATCGCAGAGAACATCAGGCAAGTTAAATCTGGGAGTCCGGATTACGCAGATCGCGACGTTGAGGAGGCCATGGAGGATTTCATCCAGCGGATCGAGTGCTATAAATCCAGCTACATGCCTATAGAT]
[+] EMBL FR0064075 [ CACTGGAGNATAACATGGAGCTTCCTCAGCTGGAGCGCGTGAGACTCCGCAGGTGTGACAGTGCAGCATCAGTTCCTCAGTTCTGTAACTCTCCCACGATGATTGTGATGGTGGGCCTGCCAGCCCGAGGGAAGACCTACATCTCCAAGAAGCTCACCCGTTACCTGAACTGGATCGGCGTGCCCACAAAAATGTTCAACGTGGGCCAGTACCGCCGGGAGGCCG CAAGATCTACGAGAACTTTGAGGTCTTTAAACCTGATAACGAGGG ]
[+] EMBL FR0063340 [ CTCAGCTGGAGCGCGTGAGACTCCGCAGTTGTGACAGTGCAGCATCAGTTCCTCAGTTCTGTAACTCTCCCACGATGATTGTGATGGTGGGCCTGCCAGCCCGAGGGAAGACCTACATCTCCAAGAAGCTCACCCGTTACCTGAACTGGATCGGCGTGCCCACAAAAATGTTCAACGTGGGCCAGTACCGCCGGGAGGCGCGCAAGATCTACGAGAACTTTGAGGTCTTTACACCTGATAACGAGGGGGCCATGAGGATCCGCTAGCTCTG GCAGC ]
[+] EMBL FR0064021 [ GTGACAGTGCAGCATCAGTTCCTCAGGTGTGTAACTCTCCCACGATGATTGTGATGGTGCGCCTGCCAGCCCGAGGGAAGA CTACATCTCCAAGAAGCTCACCCGTTACCTGAACTGGATCGGCGTGCCCACAAAAATGTTCAACGTGGGCCAGTACCGCCGGGAGGCCGTCAAGATCTACGAGAACTTTGAGTTCTTTAAACCTGATAACGAGGGGGCCATGAGGATCCGCAAGGCCTGTGCAGCTGCCGCCCTCAAAGACGTCGCCGCCTACTTCACCAAGGAGCAGGGACAAGTGGC ]
consensusID : consensus_2460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[CTCTCGATGTGATGTGAGTGGTCCTGGGCGATGGTGATGNAGGTGTAGTAGGGCGAGACTTCAGAAATGTACCAGCTGGTGGATGAACGTATGACCGTTATTTCATGGCCCCGAGAGTGAAGCAGCTCCAAGAGGATTTTCATGTTCAGCCAGTGGCTCCCATCTAGAGGGTAAACAAGCACTTTTCCTCCATCACAGGTGGAGGACAGAGCTGCTGAGAAGAACACCAGGAAGGTCAGGACTGGATATGAAGCCATTTGTTTTCACTGGCCACAGTCTCCAGCGCTGTGTTGCTGGCTACCTCACTGGAGTATAACATGGAGCTTCCTCAGCTGGAGCGCGTGAGACTCCGCAGGTGTGACAGTGCAGGTGAGACCAACAAAGCATGCCTGAGCAACCACGCAGCAAAGGTCTCTTCTTTTGCAGTCGCCAAAAGGCTCTGGTAGAATGTGGCTGCTGCCT]
[-] EMBL FR0063097 [CTCTCGATGTGATGTGAGTGGTCCTGGGCGATGGTGATGNAGGTGTAGTAGGGCGAGACTTCAGAAATGTACCAGCTGGTGGATGAACGTATGACCGTTATTTCATGGCCCCGAGAGTGAAGCAGCTCCAAGAGGATTTTCATGTTCAGCCAGTGGCTCCCATCTAGAGGGTAAACAAGCACTTTTCCTCCATCACAGGTGGAGGACAGAGCTGCTGAGAAGAACACCAGGAAGGTCAGGACTGGATATGAAGCCATTTGTTTTCACTGGCCACAGTCTCCAGCGCTGTGTTGCTGGCTACCTCACTGGAGTATAACATGGAGCTTCCTCAGCTGGAGCGCGTGAGACTCCGCAGGTGTGACAGTGCAGGTGAGACCAACAAAGCATGCCTGAGCAACCACGCAGCAAAGGTCTCTTCTTTTGCAGTCGCCAAAAGGCTCTGGTAGAATGTGGCTGCTGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2460#0 CACTGGCCACAGTCTCCGGCGCTGTGTTGCTGGCTACCTCACTGGAGTATAACATGGAGC 60
consensus_2460#1 ------------------------------------------------------------
consensus_2460#0 TTCCTCAGCTGGAGCGCGTGAGACTCCGCAGGTGTGACAGTGCAGCATCAGTTCCTCAGT 120
consensus_2460#1 -------------------------CTCTCGATGTGATGTGAGTGGTCCTGGGCGATGGT 35
* * ***** * * * * **
consensus_2460#0 TCTGTAACTCTCCCACGATGATTGTGATGGTGGGCCTGCCAGCCCGAGGGAAGACCTACA 180
consensus_2460#1 GATGNAGGTGTAGTAGGGCGA--GACTTCAGAAATGTACCAGCTGGTGGATGAACGTATG 93
** * * * * * ** * * * ***** * ** ** **
consensus_2460#0 TCTCCAAGAAGCTCACCCGTTACCTGAACTGGATCGGCGTGCCCACAAAAATGTTCAACG 240
consensus_2460#1 ACCGTTA-----TTTCATGGCCCCGAGAGTGAAGCAGC---TCCAAGAGGATTTTCATGT 145
* * * * * ** * ** * * ** *** * ** ****
consensus_2460#0 TGGGCCAGTACCGCCGGGAGGCCGTCAAGATCTACGAGAACTTTGAGTTCTTTAAACCTG 300
consensus_2460#1 TCAGCCAGTGGCTCCCA----TCTAGAGGGTAAACAAGCACTTTTCCTCCATCACAGGTG 201
* ****** * ** * * * * ** ** ***** * * * * * **
consensus_2460#0 -ATAACGAGGGGGCCATGAGGATCCGCAAGGCCTGTGCAGCTGCCGCCCTCAAAGACGTC 359
consensus_2460#1 GAGGACAGAGCTGCTGAGAAGAACACCAGGAAGGTCAGGACTG---------GATATGAA 252
* ** * ** ** ** * ** * *** * * *
consensus_2460#0 GCCGCCTACTTCACCAAGGAGCAGGGACAAGTGGCTGTGTTCGATGCTACCAACACCACC 419
consensus_2460#1 GCCATTTGTTTTCACTGGCCACAGTCTCCAGCG-CTGTGTT----GCTGGCTACCTCACT 307
*** * ** * * *** * ** * ******* *** * ** ***
consensus_2460#0 CGAGAGAGGCGGACAATCATCCTCACCTTTGCAAAAGAGAGGGGCTACAAAGTTTTCTTT 479
consensus_2460#1 GGAGTATAACATG-GAGCTTCCTCAGCTG---GAGCGCGTGAGACTCCGCAGGTGTGACA 363
*** * * * ****** ** * * * * * ** * ** * *
consensus_2460#0 GTGGAATCAATCTGTGATGACCCGGAAATCATCGCAGAGAACATCAGGCAAGTTAAATCT 539
consensus_2460#1 GTGCAG-------GTGA-GACCAACAAAGCATGCCTGAGCA-ACCACGCAGCAAAGGTCT 414
*** * **** **** *** *** * *** * * ** *** * ***
consensus_2460#0 GGGAGTCCGGATTACGCAGATCGCGACGTTGAGGAGGCCATGGAGGATTTCATCCAGCGG 599
consensus_2460#1 CTTCTTTTGCAGTCGCCAAAAGGCTCTGGT-AGAATGTGGCTGCTGCCT----------- 462
* * * * ** * ** * * ** * * * * *
consensus_2460#0 ATCGAGTGCTATAAATCCAGCTACATGCCTATAGAT 635
consensus_2460#1 ------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |