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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 605 fasta sequence
[TAAGAGAAATTACCATTTTTTTCAGCTACATTGGTATTTGTATGACTACTGCATCAGGGCAGTAAAACGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTGGAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCC-TTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAAGGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGAGGCACGTGCCTTTAACCGGATATACGTGGCGTCGGTC]
[+] EMBL CA589760 [TAAGAGAAATTACCATTTTTTTCAGCTACATTGGTATTTGTATGACTACTGCATCAGGGCAGTAAAACGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCC TTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAAGGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGAGGCACGTGCCTTTAACCGGATATACGTGGCGTCGGTC]
[+] EMBL FR0061811 [ tATGGAGAATGGACAGGGCACAGGCTGGAAGCTTGGACTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATTAGACAGGCCTTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTTGGATTCTGTAACAATGAAGCACAAGGGGT ]
[+] EMBL FR0061825 [ TGGAGAATGGACAGGGCACAGGCTGGAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCC TTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGGTTGC ]
consensusID : consensus_2485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[AACGGAGACTGCGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAAGGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGAGGCACGTGCCTTTAACCGGATA]
[+] EMBL CA589160 [AACGGAGACTGCGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAAGGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGAGGCACGTGCCTTTAACCGGATA]
consensusID : consensus_2485#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence
[AACGGAGACTGCGAATTTGTTGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGGGGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTGCAGAGGGCAAAGAAGTATGCCATGGAACGAAGTATTAAGAGCGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAG]
[+] EMBL CA590255 [AACGGAGACTGCGAATTTGTTGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGGGGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAG]
[+] EMBL CA590104 [ CGATGGAGAATGGACAGGGCACAGGCTCCAATCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTGCACAGGGCAAAGAAGTATGCCATGGAACGATGTATTAAGAGC ]
consensusID : consensus_2485#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[TGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGGGGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAATTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAA]
[+] EMBL BU807667 [TGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGGGGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAATTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2485#2 AACGGAGACTGCGAATTTGTTGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGG 60
consensus_2485#3 --------------------TGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGG 40
consensus_2485#0 -----------------------------------------TAAGAGAAATTACCATTTT 19
consensus_2485#1 ------------------------------------------------------------
consensus_2485#2 GGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGC 120
consensus_2485#3 GGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGC 100
consensus_2485#0 TTTCAGCTACATTGGTATTTGTATGACTACTGCATCAGGGCAGTAAAACGGTGGTGAAGC 79
consensus_2485#1 ------------------------------------AACGGAGACTGCGGGTGGTGAAGC 24
***********
consensus_2485#2 TCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCC 180
consensus_2485#3 TCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCC 160
consensus_2485#0 TCTGACGATGGAGAATGGACAGGGCACAGGCTGGAAGCTTGGCCTTCCGCCTCTCACCCC 139
consensus_2485#1 TCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCC 84
******************************** **************************
consensus_2485#2 GGAGCAGCAGGAGGCACTGCAGAGGGCAAAGAAGTATGCCATGGAACGAAGTATTAAGAG 240
consensus_2485#3 GGAGCAGCAGGAGGCACTACAGAGGGCAAAGAATTATGCCATGGAACAAAGTATTAAGAG 220
consensus_2485#0 GGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAG 199
consensus_2485#1 GGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAG 144
****************** ************** ************* ************
consensus_2485#2 CGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGC 300
consensus_2485#3 TGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAG----- 275
consensus_2485#0 TGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAG----- 254
consensus_2485#1 TGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGC 204
******************************************************
consensus_2485#2 AGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAG 360
consensus_2485#3 ----------------------------------------------GTGGCAGCCCAAAG 289
consensus_2485#0 ----------------------------------------------GTGGCAGCCCAAAG 268
consensus_2485#1 AGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAG 264
**************
consensus_2485#2 ACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGG 420
consensus_2485#3 ACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGG 349
consensus_2485#0 ACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGG 328
consensus_2485#1 ACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGG 324
************************************************************
consensus_2485#2 GGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTC 480
consensus_2485#3 GGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTC 409
consensus_2485#0 GGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTC 388
consensus_2485#1 GGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTC 384
************************************************************
consensus_2485#2 CTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGA 540
consensus_2485#3 CTGGGATTCTGTAACAATGAAGCACAA--------------------------------- 436
consensus_2485#0 CTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGA 448
consensus_2485#1 CTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGA 444
***************************
consensus_2485#2 GGCTGCTCAGCTGGCACTGGAGCAG----------------------------------- 565
consensus_2485#3 ------------------------------------------------------------
consensus_2485#0 GGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAA 508
consensus_2485#1 GGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAA 504
consensus_2485#2 ------------------------------------------------------------
consensus_2485#3 ------------------------------------------------------------
consensus_2485#0 GGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGA 568
consensus_2485#1 GGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGA 564
consensus_2485#2 -------------------------------------
consensus_2485#3 -------------------------------------
consensus_2485#0 GGCACGTGCCTTTAACCGGATATACGTGGCGTCGGTC 605
consensus_2485#1 GGCACGTGCCTTTAACCGGATA--------------- 586
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |