These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 735 fasta sequence [CTGCAGACAGCAGCAGCACCTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACGCCAAAGTAAACGGATGGTACGAGGCTCCTTCCGGAGGCAGCACCACTGAGGGCTTCCAGGACTTCACGGGGGGGCATTTCTGACCGACCCGACCTGGGGAAAACCGGATCCTCACCTTCTTCCAAATCCACAAGA] [+] EMBL BU808417 [CTGCAGACAGCAGCAGCACCTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGTTCGTCCACTCGGCTGAAAGCTCGGAGTTTTGGAGC ] [+] EMBL CA333116 [ CAGCAGTAGCACCTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCACAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGTTCCTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGGTGGAAAAGGCTTACGCCAAAAGA ] [+] EMBL CA845945 [ CCTCTTCAGCCTGCATCACCTCACAATGTCCGGCATCGCAGCC ACTTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGGTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACCCCCAAGTAAACGGATGGTACGAGGCTCCTTCCCGA GCAGCACCACTGAGGGCTTCCAGGACTTCACGGGGGGGCATTTCTGACCGACCCGACCTGGGGAAAACCGGATCCTCACCTTCTTCCAAATCCACAAGA] [+] EMBL CA589489 [ CTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTCTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACGCCAAAGTAAACGGATGCTACGAGGCTCTTTCCGGAGGCAGC ] [+] EMBL FR0058915 [ CTTCTCCGGCCTGCATCACCTCACAATGTCCGGTTTTG AGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGCCATCGGAACCACCGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGCGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGGTGGGGTACGATGAACTGGGCCCGAGTTCATACAAAGGTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACT ] [+] EMBL FR0058505 [ TCGCAGCCAATCTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGGTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTT ] consensusID : consensus_2489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [TGTGTGTCTGCAGGTGCACTGCATCGCTGTGTTTTGCAACGTTAATTTGATATTGCACAGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTTCTGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACGCCAAAGTAAACGGATGCTACGAGGCTCTTTCCGGAGGCAGCACCACTGAGGGCTTCCAGGACTTCACGGGGGGCATTTCTCGACGACCCGACCTGGGAAACGCCCATACTCCCCTCTTCCACATCATCAATAACGCACCTGCACACAAGGCT] [+] EMBL CA332759 [TGTGTGTCTGCAGGTGCACTGCATCGCTGTGTTTTGCAACGTTAATTTGATATTGCACAGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTTCTGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACGCCAAAGTAAACGGATGCTACGAGGCTCTTTCCGGAGGCAGCACCACTGAGGGCTTCCAGGACTTCACGGGGGGCATTTCTCGACGACCCGACCTGGGAAACGCCCATACTCCCCTCTTCCACATCATCAATAACGCACCTGCACACAAGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2489#0 CTGCAGACAGCAGCAGCACCTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAG 60 consensus_2489#1 ------------------------------------------------------------ consensus_2489#0 CCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGA 120 consensus_2489#1 ------------------------------------------------------------ consensus_2489#0 AATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGT 180 consensus_2489#1 ------------------------------------------------------------ consensus_2489#0 TCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGA 240 consensus_2489#1 ------------------------------------------------------------ consensus_2489#0 GTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGC 300 consensus_2489#1 -------------------------------------------TGTGTGTCTGCAGGTGC 17 **** * ** consensus_2489#0 AATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCT 360 consensus_2489#1 ACTGCATCGCTG----TGTTTTGCAACGTTA-ATTTGATATTGCACA---GGTGACTGCT 69 * * ***** * ** ** * * ***** * * * ********** consensus_2489#0 GGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCC 420 consensus_2489#1 GGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCC 129 ************************************************************ consensus_2489#0 CGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGT 480 consensus_2489#1 CGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGT 189 ************************************************************ consensus_2489#0 TTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGC 540 consensus_2489#1 TTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTTC 249 ********************************************************** * consensus_2489#0 TGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACG 600 consensus_2489#1 TGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACG 309 ************************************************************ consensus_2489#0 CCAAAGTAAACGGATGGTACGAGGCTCCTTCCGGAGGCAGCACCACTGAGGGCTTCCAGG 660 consensus_2489#1 CCAAAGTAAACGGATGCTACGAGGCTCTTTCCGGAGGCAGCACCACTGAGGGCTTCCAGG 369 **************** ********** ******************************** consensus_2489#0 ACTTCACGGGGGGGCATTTCTGACCGACCCGACCTGGGGAAAACCGGATCCTCACCTTCT 720 consensus_2489#1 ACTTCACGGGGGG-CATTTCTCGACGACCCGACCTGGGAAACGCCC-ATACTC-CCCTCT 426 ************* ******* ************** ** ** ** *** ** *** consensus_2489#0 TCCAAATCCACAAGA-------------------- 735 consensus_2489#1 TCCACATCATCAATAACGCACCTGCACACAAGGCT 461 **** *** *** * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |