These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [CCCACCTGCCAAAACGGGCCGTGTTTGAAGAAGCGCCCTGCTTCGATGGTTCTTCTCTACGTGTATGGTGGGTTCCCTGTGGTCATCAGGCGACACCACCCTCACCAGCAGACAGTCGGGTTTACAGCCATGTTTGTCAGGAGCTGCTCAAACCCTTTGTGGGTCTTTGAGAAGACTCCGAGGTCAACGGGACCAGGGGAACGTGCACTGATGAGGTCTGGTGCTGGCTGACTGGTTCTTCTCACAAGGTTCTGCTGTCGTCTGTGTACAGTAACTTGTTCTTTGTCCATCTGTGATCATCAGCTTCAGGGGTAGCTTACATGGAGGCGGGGCTAGAATAACAGCAAGTATGTGAGTGTTTCTGTATTATAATTCTGTATCATCGGTATTCTTTTTGTAACTTTGATTATGAAAATCAGCCGGGTTTTTAGTCCTGGTCTGATCTCTTCCGTGATGAAGGTGACAACAGGTGTATCATCTCTGTTTATGAAGCTCTTTCTGTCCCATTGTGTTGTGAAAGGCTTTTTGTGCTTCA] [+] EMBL FR0056159 [CCCACCTGCCAAAACGGGCCGTGTTTGAAGAAGCGCCCTGCTTCGATGGTTCTTCTCTACGTGTATGGTGGGTTCCCTGTGGTCATCAGGCGACACCACCCTCACCAGCAGACAGTCGGGTTTACAGCCATGTTTGTCAGGAGCTGCTCAAACCCTTTGTGGGTCTTTGAGAAGACTCCGAGGTCAACGGGACCAGGGGAACGTGCACTGATGAGGTCTGGTGCTGGCTGACTGGTTCTTCTCACAAGGTTCTGCTGTCGTCTGTGTACAGTAACTTGTTCTTTGTCCATCTGTGATCATCAGCTTCAGGGGTAGCTTACATGGAGGCGGGGCTAGAATAACAGCAAGTATGTGAGTGTTTCTGTATTATAATTCTGTATCATCGGTATTCTTTTTGTAACTTTGATTATGAAAATCAGCCGGGTTTTTAGTCCTGGTCTGATCTCTTCCGTGATGAAGGTGACAACAGGTGTATCATCTCTGTTTATGAAGCTCTTTCTGTCCCATTGTGTTGTGAAAGGCTTTTTGTGCTTCA] consensusID : consensus_249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 70 fasta sequence [TGTCTCATTGTGTTGTGAAAGGCTTTTTGTGCTTCATCAAGCTCATGACAGCAAATTAAAGGCGTTGCAA] [+] EMBL CA329951 [TGTCTCATTGTGTTGTGAAAGGCTTTTTGTGCTTCATCAAGCTCATGACAGCAAATTAAAGGCGTTGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_249#0 CCCACCTGCCAAAACGGGCCGTGTTTGAAGAAGCGCCCTGCTTCGATGGTTCTTCTCTAC 60 consensus_249#1 ------------------------------------------------------------ consensus_249#0 GTGTATGGTGGGTTCCCTGTGGTCATCAGGCGACACCACCCTCACCAGCAGACAGTCGGG 120 consensus_249#1 ------------------------------------------------------------ consensus_249#0 TTTACAGCCATGTTTGTCAGGAGCTGCTCAAACCCTTTGTGGGTCTTTGAGAAGACTCCG 180 consensus_249#1 ------------------------------------------------------------ consensus_249#0 AGGTCAACGGGACCAGGGGAACGTGCACTGATGAGGTCTGGTGCTGGCTGACTGGTTCTT 240 consensus_249#1 ------------------------------------------------------------ consensus_249#0 CTCACAAGGTTCTGCTGTCGTCTGTGTACAGTAACTTGTTCTTTGTCCATCT-GTGATCA 299 consensus_249#1 -------TGTCTCATTGT--GTTGTGAAAGGCTTTTTGTGCTTCATCAAGCTCATGACAG 51 ** *** **** * * **** *** ** * ** *** consensus_249#0 TCAGCTTCAGGGGTAGCTTACATGGAGGCGGGGCTAGAATAACAGCAAGTATGTGAGTGT 359 consensus_249#1 CAAATTAAAGGCGTTGCAA----------------------------------------- 70 * * *** ** ** consensus_249#0 TTCTGTATTATAATTCTGTATCATCGGTATTCTTTTTGTAACTTTGATTATGAAAATCAG 419 consensus_249#1 ------------------------------------------------------------ consensus_249#0 CCGGGTTTTTAGTCCTGGTCTGATCTCTTCCGTGATGAAGGTGACAACAGGTGTATCATC 479 consensus_249#1 ------------------------------------------------------------ consensus_249#0 TCTGTTTATGAAGCTCTTTCTGTCCCATTGTGTTGTGAAAGGCTTTTTGTGCTTCA 535 consensus_249#1 -------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |