These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 560 fasta sequence [AGGGGAGGATTATCTTCTACGAGGACCGGAACTTCCAGGGCCGATCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATGGAAATAAAGTAA] [+] EMBL CA340948 [ GGGGAGGATTATCTTCTACGAGGACCGGAACTTCCAGGGCCGATCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGA ] [+] EMBL FR0057804 [ GAGGATTATCTTCTACGAGGACCGGAACTTCCAGGGCCGATCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGNGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTNTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCT ] [+] EMBL CA341116 [aattcgGCACGAGCTTCTACGAGGACCGGAACTTCCAGGGCCGATCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATGGAAATAAAGTAA] [+] EMBL FR0057797 [ TCCTATGAAACCAGCAGCGACTGCCCAGAGCTCACTTCTTATTTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTT ] [+] EMBL CA341123 [ GCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAACTCCTGCAGGGTGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTTTTTTCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATG ] consensusID : consensus_2490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 552 fasta sequence [TGCATAAGGCTGAAACAATAAACAGGAAAATGCCAAAAAAAAAAAATGAAAAAAAAAAAAAAAAAAAAATGAACCGATGAAACATACTGCAGGATGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAAGAAGGAGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATGGAAATAAAGTAAATTGAAACA] [+] EMBL FR0057803 [TGCATAAGGCTGAAACAATAAACAGGAAAATGCCAAAAAAAAAAAATGAAAAAAAAAAAAAAAAAAAAATGAACCGATGAAACATACTGCAGGATGGAGAGTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGCGGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGTCCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGAACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTTAG ] [+] EMBL CA340949 [ GCACGAGGAACGTTTCCGTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGCCAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACCTAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAAACTGTGAGATGGAAATAAAGTAAATTGAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2490#0 AGGGGAGGATTATCTTCTACGAGGACCGGAACTTCCAG--GGCCGATCCTATGAAACCAG 58 consensus_2490#1 ---------------TGCATAAGG-CTGAAACAATAAACAGGAAAATGCCAAAAAAAAAA 44 * * *** * * *** * ** ** * * *** * consensus_2490#0 CAGCGACTGCCCAGAGCTCACTTCTTATCTGAGCCGCTGTAAC-TCCTGCAGGGTGGAGA 117 consensus_2490#1 AATGAAAAAAAAAAAAAAAA----AAAAATGAACCGATGAAACATACTGCAGGATGGAGA 100 * * * * * * *** *** ** *** * ******* ****** consensus_2490#0 GTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGC 177 consensus_2490#1 GTGGCCTTTTCATGGTCTATGAGAAGCCCAACTTCATGGGTCATCAGATGCTGGTGAGGC 160 ************************************************************ consensus_2490#0 GGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGT 237 consensus_2490#1 GGGGAGAGTATCCAGACAACCAGCACCTGATGGGAATGAGCATGAGTGACTGTATCAGGT 220 ************************************************************ consensus_2490#0 CCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGA 297 consensus_2490#1 CCAGCCGCATGATCCCCTCGCACAGGGGACCCTTCCGAATGAGGATCTATGAGAGGGAGA 280 ************************************************************ consensus_2490#0 ACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAATATGATGGAACGTTTCC 357 consensus_2490#1 ACTTCGGAGGCCAGATGCACGAGCTCACGGATGACTGTGAGAAGAAGGAGGAACGTTTCC 340 ******************************************* * * *********** consensus_2490#0 GTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGC 417 consensus_2490#1 GTATGTCCGACTGCCAGTCCTGCCACGTGATGGATGGCCACTGGCTGATGTTCGAGCAGC 400 ************************************************************ consensus_2490#0 CAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACC 477 consensus_2490#1 CAAACTTCAGAGGACGGATGCTTTACGTCAGGCCTGGAGAGTACAGAGATCTCCGAGACC 460 ************************************************************ consensus_2490#0 TAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAA 537 consensus_2490#1 TAGAAATGAGCAATCTGTCCAGAATCAGCTCTATCAAACGCATAACAGATTCTTGTTAAA 520 ************************************************************ consensus_2490#0 ACTGTGAGATGGAAATAAAGTAA--------- 560 consensus_2490#1 ACTGTGAGATGGAAATAAAGTAAATTGAAACA 552 *********************** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |