These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 654 fasta sequence [TGAGCGGGAGGAAGGCGGCTGGCGCCATCTTGGCTGTTTTAATGAGTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATGGTACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGGGACAAGAAGCTGACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCCCAAGGTGAAAATGGCACTGCGTACATCGGGCCATTTACTCCTTGGAGTGGTGCGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCTTTCATCAAGATCAAGATGGCCTTTAGGCCAAGTGTGGTGGATCTACCTGAGGAAAACAGGGAGGCAGCCTACAACGCCATCACCCTACCTGAAGAGTTTCACGACTTTGACCAGCCACTTCCTGATCTGGATGACATCGATGTGGCCCAGCAGGTCACGCTANACCAGAGCAGAGGAGAAGAGATTACCATGAGAGAAGATGTCGGCAATCTCAACCTGCTGGAGGACAATGACTTTGCTGATTTGGGATG] [+] EMBL BU806215 [TGAGCGGGAGGAAGGCGGCTGGCGCCATCTTGGCTGTTTTAATGAGTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATTTTACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGGGACAAGAAGTTGACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCCCAAGGTGAAAATGGCACTGGGTACATCGGGCCATTTACTCCTTGGAGTGGTGCGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCTTTCATCAAGATCAAGATGGCCTTTAGGCCAGGTGTGGTGGATCTACCTGAGGAAAACAGGGAGGCAGCCTACAACGCCATCACCCTACCTGAAGAGTTTCACGACTTTGACCAGCCACTTCCTGATCTGGATGACATCGATGTGGCCCAGCAGTTCACGCTANACCAGAGCAGAGTAGAAGAGATTACCATGAGA ] [+] EMBL FR0061488 [ CCATCTTGGCTGTTTTAATGAGTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATGGTACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGGGACAAGAAGCTGACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCCCAAGGTGAAAATGGCACTGCGTACATCGGGCCATTTGCTCCTTGGAGTGGTGCGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGA ] [+] EMBL FR0061521 [ TGGCTGTTTTAATGAGTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATGGGACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGTGACAAGAAGCTGACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCCCAAGGTGAAAATGGCACTGC ] [+] EMBL FR0058521 [ CCTAATCTTTGGGACTTTACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGGGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGGGGGCCGTTGGCCAAGATATGGCTGGCGGCCCATTGTGACAGGAAGCTGACCA ] [+] EMBL CA588501 [ TTGTCCTCAACAAACGTGGGCCGCTGGCCAAGATATGGCTGGCCGCCCATTGGGACAAGAAGCTGACCAGGGCCCATGTCTTTGAGTGCAACTTGGAGAGCATAGCTGAAAGCATCCTTTCCCCCAAGGAGAAAATGGCACTGCGTACATCGGACCATTTACTCCTTGGAGTGGTGCGAATCTACCACAGGAAGGCCAAGAACCTGCTTGCTGACTGTAATGAACCTTTCATCAAAATCAAGATGGCCTATAGGCCAAGTGCGGTGGATCTACCTGAGGAAAACAGGGAGGCAGCCTACAACGGC ] [+] EMBL FR0060616 [ GGAGGGGGGCGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCTTTCATCAAGATCAAGATGGCCTTTAGGCCCAGTGTGGGGTATCTACCTGAGGAAAACAGGGGAGGAGCCTACAACGCCATCACCCTACCTGAAGAGTTTCACGACTTTGACCAGCCACTTCCTGATCTGGATGACATCGATGTGGCCCAGCAGGTCACGCTAAACCAGAGCAGAGGAGAAGAGATTACCATGAGAGAAGATGTCGGCAATCTCAACCTGCTGGAGGACAATGACTTTGCTGATTTGGGATG] consensusID : consensus_2497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [GTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATTTTACCATAAACGGGATACGTCATGATGCCACCTGATCATGGAGACGATGAGGACGACTTTGACAACCTCCAGTCACCGGGTCCAGACAGCCCAGACTCTGGCCCAGCTGAACCTCTGCCAGCAATGGCTGACCAGACAGAACAGACCACTCTTGTGACAATGAGGAGGAGGCCTTTGCCTTGGAACCCATTGACATCACTGTGAAAGAGACTAAGGCAAAGCGTAAGAGGAAGCTGATTGTGGACAGTGTGAAGGAGCTGGACAGTAAGACCATCAGGGCCCAGCTGTCAGACTACTCGGACATCGTCACCACTCTGGATCTTGCACCTCCAACCAAGAAGCTCATGATGTGGAAGGAGACTGGAGGAGTTGAGAAGCTATTCTCTCTGCCTGCCCAACCCCTCTGGAATGCCAGGCTGCTGAAGATGTTCACACGCTGCCTGACTCCATTGGTGCCAGATGAACTGAGGAAGAGGCGAAAGGGTGGTGAAGCAGACAGTTTGGATGAGTTCC] [+] EMBL BU806304 [GTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATTTTACCATAAACGGGATACGTCATGATGCCACCTGATCATGGAGACGATGAGGACGACTTTGACAACCTCCAGTCACCGGGTCCAGACAGCCCAGACTCTGGCCCAGCTGAACCTCTGCCAGCAATGGCTGACCAGACAGAACAGACCACTCTTGTGACAATGAGGAGGAGGCCTTTGCCTTGGAACCCATTGACATCACTGTGAAAGAGACTAAGGCAAAGCGTAAGAGGAAGCTGATTGTGGACAGTGTGAAGGAGCTGGACAGTAAGACCATCAGGGCCCAGCTGTCAGACTACTCGGACATCGTCACCACTCTGGATCTTGCACCTCCAACCAAGAAGCTCATGATGTGGAAGGAGACTGGAGGAGTTGAGAAGCTATTCTCTCTGCCTGCCCAACCCCTCTGGAATGCCAGGCTGCTGAAGATGTTCACACGCTGCCTGACTCCATTGGTGCCAGATGAACTGAGGAAGAGGCGAAAGGGTGGTGAAGCAGACAGTTTGGATGAGTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2497#0 TGAGCGGGAGGAAGGCGGCTGGCGCCATCTTGGCTGTTTTAATGAGTACAACAGGGCAGA 60 consensus_2497#1 ---------------------------------------------GTACAACAGGGCAGA 15 *************** consensus_2497#0 ATTCACAGGGAGATATCACCTAATCTTTGGGATGGTACCATAAACGGGATACTGTTGATA 120 consensus_2497#1 ATTCACAGGGAGATATCACCTAATCTTTGGGATTTTACCATAAACGGGATAC-GTCATGA 74 ********************************* ***************** ** * consensus_2497#0 AACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGT 180 consensus_2497#1 TGCCACCTGATCATGGAGACGA-TGAGGACGACTTTGACAAC---CTCCAGTCACCGGGT 130 *** * * ** ** * *** ** * * * ** * *** ** consensus_2497#0 CCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGGGACAAGAAGCT 240 consensus_2497#1 CC--AGACAGCCCAGACT-CTGGCCCAGCTGAACCTCTGCCAGCAATGGCTGACCAGACA 187 ** ** * * * * ****** ** * ** ** *** * * * consensus_2497#0 GACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCC 300 consensus_2497#1 GAACAGA--CCACTCTTGTGACAATGAGGAGGAGGCCTTTGCCTTGGAACCCATTGACAT 245 ** ** *** * *** * **** * ** **** * consensus_2497#0 CAAGGTGAAA------ATGGCACTGCGTACATCGGGCCATTTACTCCTTGGAGTGGTGCG 354 consensus_2497#1 CACTGTGAAAGAGACTAAGGCAAAGCGTAAGAGGAAGCTGATTGTGGACAGTGTGAAGGA 305 ** ****** * **** ***** * * * * * *** * consensus_2497#0 AATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCTTTCATCAAGAT 414 consensus_2497#1 GCTGGACAGTAAGACCATCAGGGCCCAGCTGTCAGACTACTCGGACATCGTCACCACTCT 365 * ** * ** ** * ** *** * **** ** *** ** * consensus_2497#0 CAAGATGGC-CTTTAGGCCAAGTGTGGTGGATCTACCTGAGGAAAACAGGGAGGCAGCCT 473 consensus_2497#1 GGATCTTGCACCTCCAACCAAGA--AGCTCATGATGTGGAAGGAGACTGGAGG--AGTTG 421 * * ** * * ***** * ** ** * * ** ** * ** consensus_2497#0 ACAACGCCATCACCCTACCTGAAGAGTTTCACGACTTTGACCAGCCACTTCCTGATCTGG 533 consensus_2497#1 AGAAGCTATTCTCTCTGCCTGCCCAACCCCTCTGGAATG-CCAGGCTGCTGAAGATGTTC 480 * ** ** * ** **** * * * ** **** * * *** * consensus_2497#0 ATGACATCGATGTGGCCCAGCAGGTCACGCTANACCAGAGCAGAGGAGAAGAGATTACCA 593 consensus_2497#1 AC-ACGCTGCCTGACTCCATTGGTGCCAGATGAACTGAGGAAGAGGCGAAAGGGTGGTGA 539 * ** * *** * * * * ** * ***** *** * * * consensus_2497#0 TGAGAGAAGATGTCGGCAATCTCAACCTGCTGGAGGACAATGACTTTGCTGATTTGGGAT 653 consensus_2497#1 -AGCAGACAGTTTGGATGAGTTCC------------------------------------ 562 *** * * * * ** consensus_2497#0 G 654 consensus_2497#1 - |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |