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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 654 fasta sequence
[TGAGCGGGAGGAAGGCGGCTGGCGCCATCTTGGCTGTTTTAATGAGTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATGGTACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGGGACAAGAAGCTGACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCCCAAGGTGAAAATGGCACTGCGTACATCGGGCCATTTACTCCTTGGAGTGGTGCGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCTTTCATCAAGATCAAGATGGCCTTTAGGCCAAGTGTGGTGGATCTACCTGAGGAAAACAGGGAGGCAGCCTACAACGCCATCACCCTACCTGAAGAGTTTCACGACTTTGACCAGCCACTTCCTGATCTGGATGACATCGATGTGGCCCAGCAGGTCACGCTANACCAGAGCAGAGGAGAAGAGATTACCATGAGAGAAGATGTCGGCAATCTCAACCTGCTGGAGGACAATGACTTTGCTGATTTGGGATG]
[+] EMBL BU806215 [TGAGCGGGAGGAAGGCGGCTGGCGCCATCTTGGCTGTTTTAATGAGTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATTTTACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGGGACAAGAAGTTGACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCCCAAGGTGAAAATGGCACTGGGTACATCGGGCCATTTACTCCTTGGAGTGGTGCGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCTTTCATCAAGATCAAGATGGCCTTTAGGCCAGGTGTGGTGGATCTACCTGAGGAAAACAGGGAGGCAGCCTACAACGCCATCACCCTACCTGAAGAGTTTCACGACTTTGACCAGCCACTTCCTGATCTGGATGACATCGATGTGGCCCAGCAGTTCACGCTANACCAGAGCAGAGTAGAAGAGATTACCATGAGA ]
[+] EMBL FR0061488 [ CCATCTTGGCTGTTTTAATGAGTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATGGTACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGGGACAAGAAGCTGACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCCCAAGGTGAAAATGGCACTGCGTACATCGGGCCATTTGCTCCTTGGAGTGGTGCGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGA ]
[+] EMBL FR0061521 [ TGGCTGTTTTAATGAGTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATGGGACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGTGACAAGAAGCTGACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCCCAAGGTGAAAATGGCACTGC ]
[+] EMBL FR0058521 [ CCTAATCTTTGGGACTTTACCATAAACGGGATACTGTTGATAAACCATCCAACAGTGGGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGTCCTCAGCAAACGGGGGCCGTTGGCCAAGATATGGCTGGCGGCCCATTGTGACAGGAAGCTGACCA ]
[+] EMBL CA588501 [ TTGTCCTCAACAAACGTGGGCCGCTGGCCAAGATATGGCTGGCCGCCCATTGGGACAAGAAGCTGACCAGGGCCCATGTCTTTGAGTGCAACTTGGAGAGCATAGCTGAAAGCATCCTTTCCCCCAAGGAGAAAATGGCACTGCGTACATCGGACCATTTACTCCTTGGAGTGGTGCGAATCTACCACAGGAAGGCCAAGAACCTGCTTGCTGACTGTAATGAACCTTTCATCAAAATCAAGATGGCCTATAGGCCAAGTGCGGTGGATCTACCTGAGGAAAACAGGGAGGCAGCCTACAACGGC ]
[+] EMBL FR0060616 [ GGAGGGGGGCGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCTTTCATCAAGATCAAGATGGCCTTTAGGCCCAGTGTGGGGTATCTACCTGAGGAAAACAGGGGAGGAGCCTACAACGCCATCACCCTACCTGAAGAGTTTCACGACTTTGACCAGCCACTTCCTGATCTGGATGACATCGATGTGGCCCAGCAGGTCACGCTAAACCAGAGCAGAGGAGAAGAGATTACCATGAGAGAAGATGTCGGCAATCTCAACCTGCTGGAGGACAATGACTTTGCTGATTTGGGATG]
consensusID : consensus_2497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[GTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATTTTACCATAAACGGGATACGTCATGATGCCACCTGATCATGGAGACGATGAGGACGACTTTGACAACCTCCAGTCACCGGGTCCAGACAGCCCAGACTCTGGCCCAGCTGAACCTCTGCCAGCAATGGCTGACCAGACAGAACAGACCACTCTTGTGACAATGAGGAGGAGGCCTTTGCCTTGGAACCCATTGACATCACTGTGAAAGAGACTAAGGCAAAGCGTAAGAGGAAGCTGATTGTGGACAGTGTGAAGGAGCTGGACAGTAAGACCATCAGGGCCCAGCTGTCAGACTACTCGGACATCGTCACCACTCTGGATCTTGCACCTCCAACCAAGAAGCTCATGATGTGGAAGGAGACTGGAGGAGTTGAGAAGCTATTCTCTCTGCCTGCCCAACCCCTCTGGAATGCCAGGCTGCTGAAGATGTTCACACGCTGCCTGACTCCATTGGTGCCAGATGAACTGAGGAAGAGGCGAAAGGGTGGTGAAGCAGACAGTTTGGATGAGTTCC]
[+] EMBL BU806304 [GTACAACAGGGCAGAATTCACAGGGAGATATCACCTAATCTTTGGGATTTTACCATAAACGGGATACGTCATGATGCCACCTGATCATGGAGACGATGAGGACGACTTTGACAACCTCCAGTCACCGGGTCCAGACAGCCCAGACTCTGGCCCAGCTGAACCTCTGCCAGCAATGGCTGACCAGACAGAACAGACCACTCTTGTGACAATGAGGAGGAGGCCTTTGCCTTGGAACCCATTGACATCACTGTGAAAGAGACTAAGGCAAAGCGTAAGAGGAAGCTGATTGTGGACAGTGTGAAGGAGCTGGACAGTAAGACCATCAGGGCCCAGCTGTCAGACTACTCGGACATCGTCACCACTCTGGATCTTGCACCTCCAACCAAGAAGCTCATGATGTGGAAGGAGACTGGAGGAGTTGAGAAGCTATTCTCTCTGCCTGCCCAACCCCTCTGGAATGCCAGGCTGCTGAAGATGTTCACACGCTGCCTGACTCCATTGGTGCCAGATGAACTGAGGAAGAGGCGAAAGGGTGGTGAAGCAGACAGTTTGGATGAGTTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2497#0 TGAGCGGGAGGAAGGCGGCTGGCGCCATCTTGGCTGTTTTAATGAGTACAACAGGGCAGA 60
consensus_2497#1 ---------------------------------------------GTACAACAGGGCAGA 15
***************
consensus_2497#0 ATTCACAGGGAGATATCACCTAATCTTTGGGATGGTACCATAAACGGGATACTGTTGATA 120
consensus_2497#1 ATTCACAGGGAGATATCACCTAATCTTTGGGATTTTACCATAAACGGGATAC-GTCATGA 74
********************************* ***************** ** *
consensus_2497#0 AACCATCCAACAGTGTGTCTGAGTTAGGGGAGCTGGGGCCATGTTCTACGCCCACTTTGT 180
consensus_2497#1 TGCCACCTGATCATGGAGACGA-TGAGGACGACTTTGACAAC---CTCCAGTCACCGGGT 130
*** * * ** ** * *** ** * * * ** * *** **
consensus_2497#0 CCTCAGCAAACGTGGGCCGCTGGCCAAGATATGGCTGGCGGCCCATTGGGACAAGAAGCT 240
consensus_2497#1 CC--AGACAGCCCAGACT-CTGGCCCAGCTGAACCTCTGCCAGCAATGGCTGACCAGACA 187
** ** * * * * ****** ** * ** ** *** * * *
consensus_2497#0 GACCAAGGCCCATGTCTTTGAGTGCAACTTGGAGAGCAGTGTTGAAAGCATCATTTCCCC 300
consensus_2497#1 GAACAGA--CCACTCTTGTGACAATGAGGAGGAGGCCTTTGCCTTGGAACCCATTGACAT 245
** ** *** * *** * **** * ** **** *
consensus_2497#0 CAAGGTGAAA------ATGGCACTGCGTACATCGGGCCATTTACTCCTTGGAGTGGTGCG 354
consensus_2497#1 CACTGTGAAAGAGACTAAGGCAAAGCGTAAGAGGAAGCTGATTGTGGACAGTGTGAAGGA 305
** ****** * **** ***** * * * * * *** *
consensus_2497#0 AATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCTTTCATCAAGAT 414
consensus_2497#1 GCTGGACAGTAAGACCATCAGGGCCCAGCTGTCAGACTACTCGGACATCGTCACCACTCT 365
* ** * ** ** * ** *** * **** ** *** ** *
consensus_2497#0 CAAGATGGC-CTTTAGGCCAAGTGTGGTGGATCTACCTGAGGAAAACAGGGAGGCAGCCT 473
consensus_2497#1 GGATCTTGCACCTCCAACCAAGA--AGCTCATGATGTGGAAGGAGACTGGAGG--AGTTG 421
* * ** * * ***** * ** ** * * ** ** * **
consensus_2497#0 ACAACGCCATCACCCTACCTGAAGAGTTTCACGACTTTGACCAGCCACTTCCTGATCTGG 533
consensus_2497#1 AGAAGCTATTCTCTCTGCCTGCCCAACCCCTCTGGAATG-CCAGGCTGCTGAAGATGTTC 480
* ** ** * ** **** * * * ** **** * * *** *
consensus_2497#0 ATGACATCGATGTGGCCCAGCAGGTCACGCTANACCAGAGCAGAGGAGAAGAGATTACCA 593
consensus_2497#1 AC-ACGCTGCCTGACTCCATTGGTGCCAGATGAACTGAGGAAGAGGCGAAAGGGTGGTGA 539
* ** * *** * * * * ** * ***** *** * * *
consensus_2497#0 TGAGAGAAGATGTCGGCAATCTCAACCTGCTGGAGGACAATGACTTTGCTGATTTGGGAT 653
consensus_2497#1 -AGCAGACAGTTTGGATGAGTTCC------------------------------------ 562
*** * * * * **
consensus_2497#0 G 654
consensus_2497#1 -
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |