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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence
[TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGGGCAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTTCTACCAGGGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAACTGCGACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC]
[+] EMBL BU807347 [TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAACTGCGACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC]
[+] EMBL FR0059031 [ GGGCAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTTCTACCAGGGTGACGGCTGCTCCACCACT ]
consensusID : consensus_2509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 576 fasta sequence
[TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAG-AATGTGGAAACAAAACCCTG-TGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGG------CAACGACACCACCTATGTTTGTTTTAACAACAATGGCAGCGTAAAGTTCACTGGAGCAATCTTGATCAACACCCAACTGACTAAGCAAAACGTAA]
[+] EMBL BU808018 [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAATCAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGGCTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACTGCTGGAGACAAATCTGAACAACTCAG GATGTGGAACCCAAAACCTG TGTGTTAATGAGCCAGCTAACTGCGTCCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAACAACAATGGCAGCGTAAAGTTCACTGGAGCAATCTTGATCAACACCCAACTGACTAAGCAAAACGTAA]
[+] EMBL CA846881 [ CTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAG AATGTGGAAACAAAACCCTG TGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGG CAACGACACCACCTATGTTTGTTTTAAC ]
[+] EMBL CA846623 [ TACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACTTCGCTGGAGACAAATCTGAACAACTCAG AATGTGGAAACAAAACCCTG CGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGCGCCAGACAGAACAGTGGGCAAAACTTCTGAGTTGCACTGGATGGAGAGACAGACGGCTACATTGCTGCAGAAATATCTTCGGACACAACACTGGGAGG CAACGACACCACCTATGTT ]
[+] EMBL FR0056483 [ AACAGACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAGTAATGTGGGAACAAAACCCTGTTGTGTTAGTTGGGCc ]
consensusID : consensus_2509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAATCAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAACCACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTGATCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCA]
[+] EMBL BU805990 [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAATCAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAACCACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTGATCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2509#0 --TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAA 58
consensus_2509#1 TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAA 60
consensus_2509#2 TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAT 60
*********************************************************
consensus_2509#0 CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGGGCAGGCATGGACAGCAAACTGT 118
consensus_2509#1 CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGT 120
consensus_2509#2 CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGT 120
************************************* *********************
consensus_2509#0 ACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAA 178
consensus_2509#1 ACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAA 180
consensus_2509#2 ACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAA 180
**************************** ********** **************** ***
consensus_2509#0 CCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAA 238
consensus_2509#1 CCACAACGGCTTCTACCAACA--------------------------------------- 201
consensus_2509#2 CCACAACGGCTTCTACCAGTG--------------------------------------- 201
******************
consensus_2509#0 TGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTT 298
consensus_2509#1 ---------------------------------TGACGACTGCTCCCAACACAACGGCTT 228
consensus_2509#2 ---------------------------------TGACGGCTGCTCCCAGCACAATGACTT 228
***** ********* ***** * **
consensus_2509#0 CTACCAGGGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACA-CCGCTGGAG 357
consensus_2509#1 CTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACA-CCGCTGGAG 287
consensus_2509#2 CTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCA 288
******* ********* **** ** ** ** ** ***** * **
consensus_2509#0 ACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAAC 417
consensus_2509#1 ACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAAC 347
consensus_2509#2 GCACAAT--GACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTT-CTACCAGTG 345
** * ** ** * **** * * *** * * * * *
consensus_2509#0 TGCGACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAAC 477
consensus_2509#1 TGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAAC 407
consensus_2509#2 TGACGGCTACTCCCAGCACAACG-GCTTCTACCAGTGT--GACGGCTGATCC--CAGCAC 400
** * * * *** * * * * ***** *** * ** ** **
consensus_2509#0 TTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGAC 537
consensus_2509#1 TTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGAC 467
consensus_2509#2 AATGACTTCT-----ACCAGTGTGACGGCTACTCCCA----------------------- 432
*** ** * * * *** * **
consensus_2509#0 ACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC------------ 585
consensus_2509#1 ACAACACTGGGAGGCAACGACA------CCACCTATGTTTGTTTTAACAACAATGGCAGC 521
consensus_2509#2 ------------------------------------------------------------
consensus_2509#0 -------------------------------------------------------
consensus_2509#1 GTAAAGTTCACTGGAGCAATCTTGATCAACACCCAACTGACTAAGCAAAACGTAA 576
consensus_2509#2 -------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |