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Takifugu rubripes
cluster # 2509 cluster # 2509       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2509#0 length = 585 sequences # 2  
consensus_2509#1 length = 576 sequences # 4  
consensus_2509#2 length = 432 sequences # 1  

consensusID : consensus_2509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 585
fasta sequence
                              [TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGGGCAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTTCTACCAGGGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAACTGCGACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC]

[+] EMBL BU807347             [TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAACTGCGACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC]
[+] EMBL FR0059031            [                                                                                              GGGCAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTTCTACCAGGGTGACGGCTGCTCCACCACT                                                                                                                                                                                                                                                                   ]


>consensus_2509#0 TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACA AACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGGGCAGGCATGGACAGCAAACTGTAC TTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACC ACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATG GCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTTCT ACCAGGGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACA AATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAACTGC GACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTT GAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACA ACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC



consensusID : consensus_2509#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 576
fasta sequence
                              [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAG-AATGTGGAAACAAAACCCTG-TGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGG------CAACGACACCACCTATGTTTGTTTTAACAACAATGGCAGCGTAAAGTTCACTGGAGCAATCTTGATCAACACCCAACTGACTAAGCAAAACGTAA]

[+] EMBL BU808018             [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAATCAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGGCTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACTGCTGGAGACAAATCTGAACAACTCAG GATGTGGAACCCAAAACCTG TGTGTTAATGAGCCAGCTAACTGCGTCCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAACAACAATGGCAGCGTAAAGTTCACTGGAGCAATCTTGATCAACACCCAACTGACTAAGCAAAACGTAA]
[+] EMBL CA846881             [                                          CTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAG AATGTGGAAACAAAACCCTG TGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGG      CAACGACACCACCTATGTTTGTTTTAAC                                                                   ]
[+] EMBL CA846623             [                                           TACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACTTCGCTGGAGACAAATCTGAACAACTCAG AATGTGGAAACAAAACCCTG CGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGCGCCAGACAGAACAGTGGGCAAAACTTCTGAGTTGCACTGGATGGAGAGACAGACGGCTACATTGCTGCAGAAATATCTTCGGACACAACACTGGGAGG      CAACGACACCACCTATGTT                                                                            ]
[+] EMBL FR0056483            [                                                          AACAGACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAGTAATGTGGGAACAAAACCCTGTTGTGTTAGTTGGGCc                                                                                                                                                                                                                                                 ]


>consensus_2509#1 TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAA CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGT ACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAA CCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGA CGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACA ACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCT CAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCAC TGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAG GCAACGACACCACCTATGTTTGTTTTAACAACAATGGCAGCGTAAAGTTCACTGGAGCAA TCTTGATCAACACCCAACTGACTAAGCAAAACGTAA



consensusID : consensus_2509#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence
                              [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAATCAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAACCACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTGATCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCA]

[+] EMBL BU805990             [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAATCAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAACCACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTGATCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCA]


>consensus_2509#2 TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAT CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGT ACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAA CCACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAGCACAATGACTTCTACCAGTGTGA CGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAATGACTT CTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCA GCACAACGGCTTCTACCAGTGTGACGGCTGATCCCAGCACAATGACTTCTACCAGTGTGA CGGCTACTCCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2509#0      --TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAA 58
consensus_2509#1      TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAA 60
consensus_2509#2      TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAT 60
                        ********************************************************* 

consensus_2509#0      CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGGGCAGGCATGGACAGCAAACTGT 118
consensus_2509#1      CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGT 120
consensus_2509#2      CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGT 120
                      *************************************  *********************

consensus_2509#0      ACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAA 178
consensus_2509#1      ACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAA 180
consensus_2509#2      ACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAA 180
                      **************************** ********** **************** ***

consensus_2509#0      CCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAA 238
consensus_2509#1      CCACAACGGCTTCTACCAACA--------------------------------------- 201
consensus_2509#2      CCACAACGGCTTCTACCAGTG--------------------------------------- 201
                      ******************                                          

consensus_2509#0      TGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTT 298
consensus_2509#1      ---------------------------------TGACGACTGCTCCCAACACAACGGCTT 228
consensus_2509#2      ---------------------------------TGACGGCTGCTCCCAGCACAATGACTT 228
                                                       ***** ********* ***** *  **

consensus_2509#0      CTACCAGGGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACA-CCGCTGGAG 357
consensus_2509#1      CTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACA-CCGCTGGAG 287
consensus_2509#2      CTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCA 288
                      ******* ********* ****       **  **  ** **  *****  *  **    

consensus_2509#0      ACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAAC 417
consensus_2509#1      ACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAAC 347
consensus_2509#2      GCACAAT--GACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTT-CTACCAGTG 345
                       ** *     **  **   * ****    * *  *** *       *    * * *    

consensus_2509#0      TGCGACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAAC 477
consensus_2509#1      TGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAAC 407
consensus_2509#2      TGACGGCTACTCCCAGCACAACG-GCTTCTACCAGTGT--GACGGCTGATCC--CAGCAC 400
                      **    * *  * *** *    *    * *  *****   *** *  **     **  **

consensus_2509#0      TTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGAC 537
consensus_2509#1      TTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGAC 467
consensus_2509#2      AATGACTTCT-----ACCAGTGTGACGGCTACTCCCA----------------------- 432
                        *** **        *  * * *** *       **                       

consensus_2509#0      ACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC------------ 585
consensus_2509#1      ACAACACTGGGAGGCAACGACA------CCACCTATGTTTGTTTTAACAACAATGGCAGC 521
consensus_2509#2      ------------------------------------------------------------
                                                                                  

consensus_2509#0      -------------------------------------------------------
consensus_2509#1      GTAAAGTTCACTGGAGCAATCTTGATCAACACCCAACTGACTAAGCAAAACGTAA 576
consensus_2509#2      -------------------------------------------------------
                                                                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)