These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence [TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGGGCAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTTCTACCAGGGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAACTGCGACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC] [+] EMBL BU807347 [TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAACTGCGACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC] [+] EMBL FR0059031 [ GGGCAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTTCTACCAGGGTGACGGCTGCTCCACCACT ] consensusID : consensus_2509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 576 fasta sequence [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAG-AATGTGGAAACAAAACCCTG-TGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGG------CAACGACACCACCTATGTTTGTTTTAACAACAATGGCAGCGTAAAGTTCACTGGAGCAATCTTGATCAACACCCAACTGACTAAGCAAAACGTAA] [+] EMBL BU808018 [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAATCAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGGCTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACTGCTGGAGACAAATCTGAACAACTCAG GATGTGGAACCCAAAACCTG TGTGTTAATGAGCCAGCTAACTGCGTCCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAACAACAATGGCAGCGTAAAGTTCACTGGAGCAATCTTGATCAACACCCAACTGACTAAGCAAAACGTAA] [+] EMBL CA846881 [ CTACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAG AATGTGGAAACAAAACCCTG TGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAACTTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGACACAACACTGGGAGG CAACGACACCACCTATGTTTGTTTTAAC ] [+] EMBL CA846623 [ TACACCTGAGAATAAAACAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACTTCGCTGGAGACAAATCTGAACAACTCAG AATGTGGAAACAAAACCCTG CGTGTTAGTGAGCCAGCTAACTGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGCGCCAGACAGAACAGTGGGCAAAACTTCTGAGTTGCACTGGATGGAGAGACAGACGGCTACATTGCTGCAGAAATATCTTCGGACACAACACTGGGAGG CAACGACACCACCTATGTT ] [+] EMBL FR0056483 [ AACAGACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAACCACAACGGCTTCTACCAACATGACGACTGCTCCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACACCGCTGGAGACAAATCTGAACAACTCAGTAATGTGGGAACAAAACCCTGTTGTGTTAGTTGGGCc ] consensusID : consensus_2509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAATCAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAACCACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTGATCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCA] [+] EMBL BU805990 [TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAATCAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGTACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAACCACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTGATCCCAGCACAATGACTTCTACCAGTGTGACGGCTACTCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2509#0 --TGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAA 58 consensus_2509#1 TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAA 60 consensus_2509#2 TTTGCCAAGAGAAGCTGCTGGAACAAGACCTCCACCTGCGAACTACACCTGAGAATAAAT 60 ********************************************************* consensus_2509#0 CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGGGCAGGCATGGACAGCAAACTGT 118 consensus_2509#1 CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGT 120 consensus_2509#2 CAAACCTTTTTATCGCTACCAAGGAAAGGAACTCCTGCACAGGCATGGACAGCAAACTGT 120 ************************************* ********************* consensus_2509#0 ACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGTAGCTACCACCCAGGCTCAAA 178 consensus_2509#1 ACTTCACTGTCACCTTGGTGGTGCTAGCATGGGTATCTGCAGCTACCACCCAGGCTCAAA 180 consensus_2509#2 ACTTCACTGTCACCTTGGTGGTGCTAGCCTGGGTATCTGCAGCTACCACCCAGGCTGAAA 180 **************************** ********** **************** *** consensus_2509#0 CCACAACGGCTTCTACCAACACAATGGCTACAGCCAACACAACGGCTTCTACCAACACAA 238 consensus_2509#1 CCACAACGGCTTCTACCAACA--------------------------------------- 201 consensus_2509#2 CCACAACGGCTTCTACCAGTG--------------------------------------- 201 ****************** consensus_2509#0 TGGCTACAGCCAACACAACGGCTTCTACCAGTGTGACGGCTGCTCCCAACACAACGGGTT 298 consensus_2509#1 ---------------------------------TGACGACTGCTCCCAACACAACGGCTT 228 consensus_2509#2 ---------------------------------TGACGGCTGCTCCCAGCACAATGACTT 228 ***** ********* ***** * ** consensus_2509#0 CTACCAGGGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACA-CCGCTGGAG 357 consensus_2509#1 CTACCAGTGTGACGGCTGCTCCACCACTGACACCTAATAACACAGTGACA-CCGCTGGAG 287 consensus_2509#2 CTACCAGTGTGACGGCTACTCCCAGCACAACGGCTTCTACCAGTGTGACGGCTACTCCCA 288 ******* ********* **** ** ** ** ** ***** * ** consensus_2509#0 ACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAAC 417 consensus_2509#1 ACAAATCTGAACAACTCAGAATGTGGAAACAAAACCCTGTGTGTTAGTGAGCCAGCTAAC 347 consensus_2509#2 GCACAAT--GACTTCTACCAGTGTGACGGCTACTCCCAGCACAACGGCTT-CTACCAGTG 345 ** * ** ** * **** * * *** * * * * * consensus_2509#0 TGCGACCCAGGCTCAGGATCGTGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAAC 477 consensus_2509#1 TGCAACCCAGGCTCAGGATCATGTAGCTTTTTCAGTGCCAGACAGAAGAGTGGGCAAAAC 407 consensus_2509#2 TGACGGCTACTCCCAGCACAACG-GCTTCTACCAGTGT--GACGGCTGATCC--CAGCAC 400 ** * * * *** * * * * ***** *** * ** ** ** consensus_2509#0 TTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGAC 537 consensus_2509#1 TTTGAGTTTGCACTGGCTGGAGAGACAGACGGCTACATTGCTGCAGTAATATCTTCGGAC 467 consensus_2509#2 AATGACTTCT-----ACCAGTGTGACGGCTACTCCCA----------------------- 432 *** ** * * * *** * ** consensus_2509#0 ACAACACTGGGAGGCAACGACAACGACACCACCTATGTTTGTTTTAAC------------ 585 consensus_2509#1 ACAACACTGGGAGGCAACGACA------CCACCTATGTTTGTTTTAACAACAATGGCAGC 521 consensus_2509#2 ------------------------------------------------------------ consensus_2509#0 ------------------------------------------------------- consensus_2509#1 GTAAAGTTCACTGGAGCAATCTTGATCAACACCCAACTGACTAAGCAAAACGTAA 576 consensus_2509#2 ------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |