These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 644 fasta sequence [AAGCCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGACCACATCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTCCAAATTCAGCGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGGGAAACAC--TTTCTGACAGTGTTGGAAACTTCATGTATACTGTTAGTCA] [+] EMBL CA590965 [AAGCCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGACCACATCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTCCAAATTCGGCGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGGGAAACAC TTTCTGACAGTGTTGGAA ] [+] EMBL CA589696 [ CCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGACCACATCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTCCAAATTCAGCGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGGGAAACACGTATGATGAACAGGTTCCTCACTTCATGTATACTGTTAGTCA] [+] EMBL CA590830 [ CCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGTGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGACCACATCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTCCAAATTCAGGGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGGGAAACAC TTTCTGACAGTGTTG ] [+] EMBL FR0059708 [ TTTCGTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGNTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGGCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGGAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGGGACCATTGACAGGGACCc ] [+] EMBL FR0059385 [ GTTGATAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAGAGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTNTGAGTCTGANAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGGGTTGGAGACCATTGACAGGGACCTGA ] [+] EMBL FR0060067 [ CTCAGAAGAAACACCGAGAGCTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGACCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAATTGTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTAGAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAGCTCATACATGAACTGGGACTCCATCTTAATGTTGGCAGTAACACCCACTGCCATGCTGACCACATCACC ] consensusID : consensus_2511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [AAATGCGGTGCAGCCCAGAACAGGTCGTCCTCTCCCGCCGTAAACNCTTCCGCTGACCCGCTTGGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAAGTAGGTTTATGCATTTCTACAATGTTGTGGGGGGTTTTTGTTATACGGTGAAAGAAAAGCAGCAACTTTTAGCCAGTTAGCTGGCAACGTTAGCAGGAAGTGTTACCCAGCGGCTGTTAGCTAAAGTGTTTTGGCCCCTCCATAGATATATACGTGCTGGNTCTGGTCCCCTGCAGGCTACTGTTGGCACTACTGTGTTACAATCTACATTCTCCTATTACACC] [+] EMBL FR0059784 [AAATGCGGTGCAGCCCAGAACAGGTCGTCCTCTCCCGCCGTAAACNCTTCCGCTGACCCGCTTGGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTTCTTTAGACAAGTAGGTTTATGCATTTCTACAATGTTGTGGGGGGTTTTTGTTATACGGTGAAAGAAAAGCAGCAACTTTTAGCCAGTTAGCTGGCAACGTTAGCAGGAAGTGTTACCCAGCGGCTGTTAGCTAAAGTGTTTTGGCCCCTCCATAGATATATACGTGCTGGNTCTGGTCCCCTGCAGGCTACTGTTGGCACTACTGTGTTACAATCTACATTCTCCTATTACACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2511#0 AAGCCAGTTGGGCGCAGGACTTCCGGGAACCTTCTTGACATTACTCCCGTTTTTCGTTGA 60 consensus_2511#1 ------------------------------------------------------------ consensus_2511#0 TAATATCAGATCCCGCCTTTTGTCCTCAGAACGAGCTGCGATGTGCTCCCTGATGAGCAG 120 consensus_2511#1 ------------------------------------------------------------ consensus_2511#0 AGTGAGACCGGTCCAACGGGCTCTGGCTGTCTCGCTTCAGCTCAGAAGAAACACCGAGAG 180 consensus_2511#1 ------------------------------------------------------------ consensus_2511#0 CTCGAAATGCGCTCCAGCCGAGAACAGGTGGTCCTCTCCCGGTGTAAACGCTGGCGCTGA 240 consensus_2511#1 ----AAATGCGGTGCAGCCCAGAACAGGTCGTCCTCTCCCGCCGTAAACNCTTCCGCTGA 56 ******* * ***** ********* *********** ****** ** ****** consensus_2511#0 CCCGCTTCGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTT 300 consensus_2511#1 CCCGCTTGGTACTACCCGCAGATTCTATTGTTCGAGAATGGCGTCCTCGAAAGGACTGTT 116 ******* **************************************************** consensus_2511#0 CTTTAGACAATT--GTTTGAGTCTGAAAGCAGCACCTACACCTACCTGCTGGCAGATGTA 358 consensus_2511#1 CTTTAGACAAGTAGGTTTATGCATTTCTACAATGT-TGTGGGGGGTTTTTGTTATACGGT 175 ********** * **** * * ** * * ** * * * consensus_2511#0 GAGACCAGAGAAGCTGTCCTGATCGATCCTGTGCTGGAGACCATTGACAGGGACCTGAAG 418 consensus_2511#1 GAAAGAAAAGCAGCAACTTTTAGCCAGTTAG--CTGGCAAC-GTTAGCAGGAAG-TGTTA 231 ** * * ** *** * * * * * **** ** ** **** * ** consensus_2511#0 CTCATACATGAACTGGGACTCCATCTTAATGTTGCAGTTAACACCCACTGCCATGCTGAC 478 consensus_2511#1 CCCAGCGGCTGTTAGCTAAAGTGTTTTGGCCCCTCCATAGATATATAC----GTGCTGGN 287 * ** * * * ** * * * * ** ***** consensus_2511#0 CACA-TCACCAGCACAGGGTTGATGAAGACAAAGCTGGTGGGGCTGAAGAGCGCCATCTC 537 consensus_2511#1 TCTGGTCCCCTGCA---GGCTACTGTTGGCACTACTG----TGTTACAATCTACATTCTC 340 ** ** *** ** * ** * ** *** * * * * **** consensus_2511#0 CAAATTCAGCGGGGCGACGGCAGATATCCTCCTGTCAGAGAATGACAAGATCACCTTTGG 597 consensus_2511#1 CTATTACACC-------------------------------------------------- 350 * * * ** * consensus_2511#0 GAAACACTTTCTGACAGTGTTGGAAACTTCATGTATACTGTTAGTCA 644 consensus_2511#1 ----------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |