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Takifugu rubripes
cluster # 2514 cluster # 2514       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2514#0 length = 628 sequences # 6  
 consensus_2514#1 length = 218 sequences # 1  
consensusID : consensus_2514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 628
fasta sequence 
                              [AGTGATACGGACATGTTTTATTGTGAAAGACAAACACATTAAGAAATGTTTAATTTATCCATGCTTTGGTTTATTTTTTTTCTGGGCCTTACTAACATATCCGGAATACATGTAACATGGCATTAAATAGTGACCAAACTTGGCTCTCTGCGATTGTCGTGTGGACTCAGTAGTACGTTTCTTGTTCCACCCAACCGCCTGGGTTGCGTCTGAGGATATATCTTCTGCCTTCATCATACAGGAAGATGAGGAGGGAGTAGGGGAACGCACAGAACCACCAAGTTGGCTTGAGAGGGTACATTCTTAGGGCAACATCCATGCCCGGGCAGTAAGAGAGGAAGGCAGCCAGAGCGGTCTCCTCAAACAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCCTGGTCTTGCAGATGATGAGATCGGCCCACTGCACGACCACAATGCTGGCAAAGAAGGCGGTGTGGCAGGTGAACTCCACGATCTTCCTCTGCTGGTACGTCCATTGTTGGCCATAGCTGCCTTCAAGATCATTAACGGATTTGTCATCCCACATCATTCTTGTTCCCAACAGATCATAAGGGAGGAAGCCATTTTCAGCCAGGATCAC]

[-] EMBL CA847171             [AGTGATACGGACATGTTTTATTGTGAAAGACAAACACATTAAGAAATGTTTAATTTATCCATGCTTTGGTTTATTTTTTTTCTGGGCCTTACTAACATATCCGGAATACATGTAACATGGCATTAAATAGTGACCAAACTTGaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA332476             [  TGATACGGACATGTTTTATTGTGAAAGACAAACACATTAAGAAATGTTTAATTTATCCATGCTTTGGTTTATTTTTTTTCTGGGCCTTACTAACATATCCGGAATACATGTAACATGGCATTAAATAGTGACCAAACTTGGCTCTCTGCGATTGTCGTGTGGACTCAGTAGTACGTTTCTTGTTCCACCCAACCGCCTGGGTTGCGTCTGAGGATATATCTTCTGCCTTCATCATACAGGAAGATGAGGAGGGAGTAGGGGAACGCACAGAACCACCAAGTTGGCTTGAGAGGGTACATTCTTAGGGCAACATCCATGCCCGGGCAGTAAGAGAGGAAGGCAGCCAGAGCGGTCTCCTCAAACAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCCTGGTCTTGCAGATGATGAGATCGGCCCACTGCACGACCACAATGCTGGCAAAAAAGGCGTGGTCGACAGTGAACTCCACGATCCTTCCCCTGTGGAACATCCAATGGTGACCATAGCCGCCCTCCCCATCCTGACC                                                                        ]
[-] EMBL CA330266             [  TGATACGGACATGTTTTATTGTGAAAGACAAACACATTAAGAAATGTTTAATTTATCCATGCTTTGGTTTATTTTTTTTCTGGGCCTTACTAACATATCCGGAATACATGTAACATGGCATTAAATAGTGACCAAACTTGGCTCTCTGCGATTGTCGTGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA331692             [     TACGGACATGTTTTATTGTGAAAGACAAACACATTAAGAAATGTTTAATTTATCCATGCTTTGGTTTATTTTTTTTCTGGGCCTTACTAACATATCCGGAATACATGTAACATGGCATTAAATAGTGACCAAACTTGGCTCTCTGCGATTGTCGTGTGGACTCAGTAGTACGTTTCTTGTTCCACCCAACCGCCTGGGTTGCGTCTGAGGATATATCTTCTGCCTTCATCATACAGGAAGATGAGGAGGGAGTAGGGGAACGCACAGAACCACCAAGTTGGCTTGAGAGGGTACATTCTTAGGGCAACATCCATGCCCGGGCAGTAAGAGAGGAAGGCAGCCAGAGCAGTCTCCTCAAACAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCCTGGTCTTGCAGATGATGAGATCGGCCCACTGCACGACCACAATGCTGGCAAAGAAGGCGGTGTGGCAGGTGAACTCCACGATCTTCCTCTGCTGGTACGTCCATTGTTGGCCATAGCTGCCTTCAAGATCATTAACCGATTTGTCATCCCACATCATTCTTGTTCCCAACAGATCATAAGGGAGGAAGCCATTTTCAGCCAGGATCAC]
[-] EMBL CA847027             [                                                         TCCATGCTTTGGTTTATTTTTTTTCTGGGCCTTACTAACATATCCGGAATACATGTAACATGGCATTAAATAGTGACCAAACTTGGCTCTCTGCGATTGTCGTGTGGACTCAGTAGTACGTTTCTTGTTCCACCCAACCGCCTGGGTTGCGTCTGAGGATATATCTTCTGCCTTCATCATACAGGAAGATGAGGAGGGAGTAGGGGAACGCACAGAACCACCAAGTTGGCTTGAGAGGGTACATTCTTAGGGCAACATCCATGCCCGGGCAGTAAGAGAGGAAGGCAGCCAGAGCGGTCTCCTCAAACAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCCTGGTCTTGCAGATGATGAGATCGGCCCACTGCACGACCACAATGCTGGCAAAGAAGGCGGTGTGGCAGGTGA                                                                                                                                        ]
[-] EMBL FR0056094            [                                                                                                                                                                                                                                                                                                                                                                                                                       ATGGAGTTCATCCTGGTATTGCAGATGATGAGATCGGCCCACTGCACGACCACAATGCTGGCAAAGAAGGCGGTGTGGCAGGTGAACTCCACGATCTTCCTCTGCTGGTACGCCCATTGTTGTCCATAGCTGTATTCAAGATCATTAACGTATTTGTCATCCCACATCATTCTTATTCCCAACAGATCATAAG                            ]




>consensus_2514#0
AGTGATACGGACATGTTTTATTGTGAAAGACAAACACATTAAGAAATGTTTAATTTATCC
ATGCTTTGGTTTATTTTTTTTCTGGGCCTTACTAACATATCCGGAATACATGTAACATGG
CATTAAATAGTGACCAAACTTGGCTCTCTGCGATTGTCGTGTGGACTCAGTAGTACGTTT
CTTGTTCCACCCAACCGCCTGGGTTGCGTCTGAGGATATATCTTCTGCCTTCATCATACA
GGAAGATGAGGAGGGAGTAGGGGAACGCACAGAACCACCAAGTTGGCTTGAGAGGGTACA
TTCTTAGGGCAACATCCATGCCCGGGCAGTAAGAGAGGAAGGCAGCCAGAGCGGTCTCCT
CAAACAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCC
TGGTCTTGCAGATGATGAGATCGGCCCACTGCACGACCACAATGCTGGCAAAGAAGGCGG
TGTGGCAGGTGAACTCCACGATCTTCCTCTGCTGGTACGTCCATTGTTGGCCATAGCTGC
CTTCAAGATCATTAACGGATTTGTCATCCCACATCATTCTTGTTCCCAACAGATCATAAG
GGAGGAAGCCATTTTCAGCCAGGATCAC

consensusID : consensus_2514#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence 
                              [CAAGACGACGAGCGACTACCCCCCCTCACACATCCACCAACTTGGCTCGAGAGGGTACATTCTTACGCCAACATCCATCCCCGGNCAGTAAGAGAGGAAGGCACCCAGAGCGGTCTCCTCAACCAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCCTGGTCTTGCAGATGATGAGATCGGCGCACTGCACGACCA]

[-] EMBL CA847101             [CAAGACGACGAGCGACTACCCCCCCTCACACATCCACCAACTTGGCTCGAGAGGGTACATTCTTACGCCAACATCCATCCCCGGNCAGTAAGAGAGGAAGGCACCCAGAGCGGTCTCCTCAACCAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCCTGGTCTTGCAGATGATGAGATCGGCGCACTGCACGACCA]




>consensus_2514#1
CAAGACGACGAGCGACTACCCCCCCTCACACATCCACCAACTTGGCTCGAGAGGGTACAT
TCTTACGCCAACATCCATCCCCGGNCAGTAAGAGAGGAAGGCACCCAGAGCGGTCTCCTC
AACCAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCCT
GGTCTTGCAGATGATGAGATCGGCGCACTGCACGACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2514#0      AGTGATACGGACATGTTTTATTGTGAAAGACAAACACATTAAGAAATGTTTAATTTATCC 60
consensus_2514#1      ------------------------------------------------------------
                                                                                  

consensus_2514#0      ATGCTTTGGTTTATTTTTTTTCTGGGCCTTACTAACATATCCGGAATACATGTAACATGG 120
consensus_2514#1      ------------------------------------------------------------
                                                                                  

consensus_2514#0      CATTAAATAGTGACCAAACTTGGCTCTCTGCGATTGTCGTGTGGACTCAGTAGTACGTTT 180
consensus_2514#1      ------------------------------------------------------------
                                                                                  

consensus_2514#0      CTTGTTCCACCCAACCGCCTGGGTTGCGTCTGAGGATATATCTTCTGCCTTCATCATACA 240
consensus_2514#1      ------------------------------------------------------------
                                                                                  

consensus_2514#0      GGAAGATGAGGAGGGAGTAGGGGAACGCACAGAACCACCAAGTTGGCTTGAGAGGGTACA 300
consensus_2514#1      -CAAGACGACGAGCGACTACCCCCCCTCACACATCCACCAACTTGGCTCGAGAGGGTACA 59
                        **** ** *** ** **      * **** * ******* ****** ***********

consensus_2514#0      TTCTTAGGGCAACATCCATGCCCGGGCAGTAAGAGAGGAAGGCAGCCAGAGCGGTCTCCT 360
consensus_2514#1      TTCTTACGCCAACATCCATCCCCGGNCAGTAAGAGAGGAAGGCACCCAGAGCGGTCTCCT 119
                      ****** * ********** ***** ****************** ***************

consensus_2514#0      CAAACAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCC 420
consensus_2514#1      CAACCAGACCAAAGATAAGGATTCGGTTCTTCATTCCCTGCTGAAGGATGGAGTTCCTCC 179
                      *** ********************************************************

consensus_2514#0      TGGTCTTGCAGATGATGAGATCGGCCCACTGCACGACCACAATGCTGGCAAAGAAGGCGG 480
consensus_2514#1      TGGTCTTGCAGATGATGAGATCGGCGCACTGCACGACCA--------------------- 218
                      ************************* *************                     

consensus_2514#0      TGTGGCAGGTGAACTCCACGATCTTCCTCTGCTGGTACGTCCATTGTTGGCCATAGCTGC 540
consensus_2514#1      ------------------------------------------------------------
                                                                                  

consensus_2514#0      CTTCAAGATCATTAACGGATTTGTCATCCCACATCATTCTTGTTCCCAACAGATCATAAG 600
consensus_2514#1      ------------------------------------------------------------
                                                                                  

consensus_2514#0      GGAGGAAGCCATTTTCAGCCAGGATCAC 628
consensus_2514#1      ----------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)