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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 707 fasta sequence
[TCTAAATACAATACGCAACGC--GGTTGATTTTTTTTTTAAAAAAAAAAAGCTATTTCCGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCAACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACCCTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCCCAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTCACTGCCAAGGGGGTTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCCCAGCCCCCCCCTACCCCACTGGCCAGCCACTTCCCCCCAGCTCACAGGCCGACACATGGACACACACGGGGGGCTCTTATGGTCCCCCACAGCAGCAGTGGCAGCCTGGAC]
[+] EMBL FR0060470 [TCTAAATACAATACGCAACGC GGTTGATTTTTTTTTTAAAAAAAAAAAGCTATTTCCGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTAATATTTTAACAGCGTCGCCTGGAAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCGGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGACAGATGTTCCGCCTAAGTACAGTCCACAGGTGATGTCCGG ]
[+] EMBL FR0062035 [ TAAATACAATACGCAACGCGGGGTGGTGTTTTTTTTTAAAAAAAAAAAGCTATTTCCGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGGGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAG ]
[+] EMBL CA588338 [ ATTCAACGC GGTTGATTTTTTTTTTAAAAAAAAAAAGCTATCTTCGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCAACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACCCTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCCCAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTCACTGCCAAGGGGGTTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCCCAGCCCCCCCCTACCCCACTGGCCAGCCACTTCCCCCCAGCTCACAGGCCGACACATGGACACACACGGGGGGCTCTTATGGTCCCCCACAGCAGCAGTGGCAGCCTGGAC]
[+] EMBL FR0060374 [ GATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCAACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACCCTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCCCAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTCACTGCCAAGGGGGGTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCCCCAGCCCCCCCTAACCCAC ]
[+] EMBL FR0060318 [ GCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGGATGCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCAACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACCCTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCCCAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTCACTGCCAAGGGGGTTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCCCAGCCCCCCCCTACCCC ]
consensusID : consensus_2515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence
[CAGAGCCGTAACGATGTCAGCCTTTAGATGGTCTACGGTTTACTTCGTTTTGGAATTAAATAATTTCATTTACAATTTACTATTAAGCTTCTAAACAGAACTCGGGTGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGGCCGGGGCTTATCCCAACGGCGTCTACAGCCCGCTGCAGAGGCACTACCCAGGCACCGGCTTCCACCCATCCAACCCT]
[+] EMBL CA590373 [CAGAGCCGTAACGATGTCAGCCTTTAGATGGTCTACGGTTTACTTCGTTTTGGAATTAAATAATTTCATTTACAATTTACTATTAAGCTTCTAAACAGAACTCGGGTGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGGCCGGGGCTTATCCCAACGGCGTCTACAGCCCGCTGCAGAGGCACTACCCAGGCACCGGCTTCCACCCATCCAACCCT]
consensusID : consensus_2515#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence
[GCGAAGGGGGCCAAAAGTCTGAGGTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGGGAGCTAATACT]
[+] EMBL FR0059778 [GCGAAGGGGGCCAAAAGTCTGAGGTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGGGAGCTAATACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2515#0 ----TCTAAATACAATACGCAACGCGGTTGATTTTTTTTTTAAAAAAAAAAAGCTATTTC 56
consensus_2515#2 ------------------------------------------------------------
consensus_2515#1 CAGAGCCGTAACGATGTCAGCCTTTAGATGGTCTACGGTTTACTTCGTTTTGG--AATTA 58
consensus_2515#0 CGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTTATATTTTAACAGCGTCGCCTGG 116
consensus_2515#2 -------------GCGAAGGGGGCCAAAAGTCTGAGGTATATTTTAACAGCGTCGCCTGG 47
consensus_2515#1 AATAATTTCATTTACAATTTACTATTAAGCTTCTAAACAGAACTCGGGTGCGTCGCCTGG 118
* * ** * * * * * ***********
consensus_2515#0 CAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAG 176
consensus_2515#2 CAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAG 107
consensus_2515#1 CAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAG 178
************************************************************
consensus_2515#0 CCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCT 236
consensus_2515#2 CCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGGGAGCTAATACT--------- 158
consensus_2515#1 CCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCT 238
*************************************** * *
consensus_2515#0 ACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACC 296
consensus_2515#2 ------------------------------------------------------------
consensus_2515#1 ACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACC 298
consensus_2515#0 CCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCA 356
consensus_2515#2 ------------------------------------------------------------
consensus_2515#1 CCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGGCCGGGGCTTATCCCA 358
consensus_2515#0 ACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACC 416
consensus_2515#2 ------------------------------------------------------------
consensus_2515#1 ACGGCGTCTACAGCCCGCTGCAGAGGCACTACCCAGGCACCGGCTTCCACCCATCCAACC 418
consensus_2515#0 CTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCC 476
consensus_2515#2 ------------------------------------------------------------
consensus_2515#1 CT---------------------------------------------------------- 420
consensus_2515#0 CAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTC 536
consensus_2515#2 ------------------------------------------------------------
consensus_2515#1 ------------------------------------------------------------
consensus_2515#0 ACTGCCAAGGGGGTTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCC 596
consensus_2515#2 ------------------------------------------------------------
consensus_2515#1 ------------------------------------------------------------
consensus_2515#0 CAGCCCCCCCCTACCCCACTGGCCAGCCACTTCCCCCCAGCTCACAGGCCGACACATGGA 656
consensus_2515#2 ------------------------------------------------------------
consensus_2515#1 ------------------------------------------------------------
consensus_2515#0 CACACACGGGGGGCTCTTATGGTCCCCCACAGCAGCAGTGGCAGCCTGGAC 707
consensus_2515#2 ---------------------------------------------------
consensus_2515#1 ---------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |