These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 707 fasta sequence [TCTAAATACAATACGCAACGC--GGTTGATTTTTTTTTTAAAAAAAAAAAGCTATTTCCGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCAACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACCCTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCCCAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTCACTGCCAAGGGGGTTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCCCAGCCCCCCCCTACCCCACTGGCCAGCCACTTCCCCCCAGCTCACAGGCCGACACATGGACACACACGGGGGGCTCTTATGGTCCCCCACAGCAGCAGTGGCAGCCTGGAC] [+] EMBL FR0060470 [TCTAAATACAATACGCAACGC GGTTGATTTTTTTTTTAAAAAAAAAAAGCTATTTCCGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTAATATTTTAACAGCGTCGCCTGGAAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCGGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGACAGATGTTCCGCCTAAGTACAGTCCACAGGTGATGTCCGG ] [+] EMBL FR0062035 [ TAAATACAATACGCAACGCGGGGTGGTGTTTTTTTTTAAAAAAAAAAAGCTATTTCCGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGGGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAG ] [+] EMBL CA588338 [ ATTCAACGC GGTTGATTTTTTTTTTAAAAAAAAAAAGCTATCTTCGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCAACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACCCTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCCCAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTCACTGCCAAGGGGGTTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCCCAGCCCCCCCCTACCCCACTGGCCAGCCACTTCCCCCCAGCTCACAGGCCGACACATGGACACACACGGGGGGCTCTTATGGTCCCCCACAGCAGCAGTGGCAGCCTGGAC] [+] EMBL FR0060374 [ GATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCAACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACCCTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCCCAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTCACTGCCAAGGGGGGTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCCCCAGCCCCCCCTAACCCAC ] [+] EMBL FR0060318 [ GCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGGATGCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCAACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACCCTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCCCAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTCACTGCCAAGGGGGTTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCCCAGCCCCCCCCTACCCC ] consensusID : consensus_2515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [CAGAGCCGTAACGATGTCAGCCTTTAGATGGTCTACGGTTTACTTCGTTTTGGAATTAAATAATTTCATTTACAATTTACTATTAAGCTTCTAAACAGAACTCGGGTGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGGCCGGGGCTTATCCCAACGGCGTCTACAGCCCGCTGCAGAGGCACTACCCAGGCACCGGCTTCCACCCATCCAACCCT] [+] EMBL CA590373 [CAGAGCCGTAACGATGTCAGCCTTTAGATGGTCTACGGTTTACTTCGTTTTGGAATTAAATAATTTCATTTACAATTTACTATTAAGCTTCTAAACAGAACTCGGGTGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCTACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACCCCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGGCCGGGGCTTATCCCAACGGCGTCTACAGCCCGCTGCAGAGGCACTACCCAGGCACCGGCTTCCACCCATCCAACCCT] consensusID : consensus_2515#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence [GCGAAGGGGGCCAAAAGTCTGAGGTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGGGAGCTAATACT] [+] EMBL FR0059778 [GCGAAGGGGGCCAAAAGTCTGAGGTATATTTTAACAGCGTCGCCTGGCAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAGCCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGGGAGCTAATACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2515#0 ----TCTAAATACAATACGCAACGCGGTTGATTTTTTTTTTAAAAAAAAAAAGCTATTTC 56 consensus_2515#2 ------------------------------------------------------------ consensus_2515#1 CAGAGCCGTAACGATGTCAGCCTTTAGATGGTCTACGGTTTACTTCGTTTTGG--AATTA 58 consensus_2515#0 CGGGCTTGAACCTGCGAAGAAACCCAAAAGTCTGATTTATATTTTAACAGCGTCGCCTGG 116 consensus_2515#2 -------------GCGAAGGGGGCCAAAAGTCTGAGGTATATTTTAACAGCGTCGCCTGG 47 consensus_2515#1 AATAATTTCATTTACAATTTACTATTAAGCTTCTAAACAGAACTCGGGTGCGTCGCCTGG 118 * * ** * * * * * *********** consensus_2515#0 CAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAG 176 consensus_2515#2 CAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAG 107 consensus_2515#1 CAAAGCTGCGTGGCCGTTGCGTGATAACAAGTAATGCAGTCAAATCGGAAATCTTGCTAG 178 ************************************************************ consensus_2515#0 CCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCT 236 consensus_2515#2 CCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGGGAGCTAATACT--------- 158 consensus_2515#1 CCTGAAGCAACAGATCGGAAAACATCGGCGAAAATATGGATGCTCCCCAGTATCCAGGCT 238 *************************************** * * consensus_2515#0 ACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACC 296 consensus_2515#2 ------------------------------------------------------------ consensus_2515#1 ACCCGTCCCAGTACTGGTATCCCCAGTCCCATTCCACAGGACACTATGCCAGCAACTACC 298 consensus_2515#0 CCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGTCCGGGGCTTATCCCA 356 consensus_2515#2 ------------------------------------------------------------ consensus_2515#1 CCCCTGGGTCAGATGTTCCGCCTCAGTACAGTCCACAGGTGATGGCCGGGGCTTATCCCA 358 consensus_2515#0 ACGCCGTCTACAGCCCGCTGCAGAGCCACTACCCAGCCACCGCCTTCCACCCATCCAACC 416 consensus_2515#2 ------------------------------------------------------------ consensus_2515#1 ACGGCGTCTACAGCCCGCTGCAGAGGCACTACCCAGGCACCGGCTTCCACCCATCCAACC 418 consensus_2515#0 CTTTTTACTGTGCGGACCCTCAGCGACCGTCCTCGGCTCCTTTCCCTAACCAGGGCTGCC 476 consensus_2515#2 ------------------------------------------------------------ consensus_2515#1 CT---------------------------------------------------------- 420 consensus_2515#0 CAGCAGAGCAGGGCGGTGGGCCCCCCCCACACTCCCAGCATCATCACTACTCTGCTCCTC 536 consensus_2515#2 ------------------------------------------------------------ consensus_2515#1 ------------------------------------------------------------ consensus_2515#0 ACTGCCAAGGGGGTTCTGGATACTCTGCTGGACCCTACCCACAGTACAGTGAAGGCAGCC 596 consensus_2515#2 ------------------------------------------------------------ consensus_2515#1 ------------------------------------------------------------ consensus_2515#0 CAGCCCCCCCCTACCCCACTGGCCAGCCACTTCCCCCCAGCTCACAGGCCGACACATGGA 656 consensus_2515#2 ------------------------------------------------------------ consensus_2515#1 ------------------------------------------------------------ consensus_2515#0 CACACACGGGGGGCTCTTATGGTCCCCCACAGCAGCAGTGGCAGCCTGGAC 707 consensus_2515#2 --------------------------------------------------- consensus_2515#1 --------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |