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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 640 fasta sequence
[TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCTCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTCCACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA]
[+] EMBL CA590386 [TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGNACTACAGGGNCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCCTCCATCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGNTCTCC ]
[+] EMBL CA333272 [ GTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCTCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTCCACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA]
[+] EMBL CA846060 [ ccTTTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATCTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTG ]
[+] EMBL CA590459 [ CTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTCTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCTCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGCCTCAGTTCTCCACCATTGAATATGTGGTTCAGCGTGGTCCTCAG ]
[+] EMBL FR0063319 [ GGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCAGGCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGGTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGGACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGGCCGCGAGCCGACTGGAGGCGACCCCGATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGGCCTGCCTC ]
consensusID : consensus_2516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 345 fasta sequence
[GCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGGGGTCCCAGGGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC]
[+] EMBL FR0060343 [GCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC]
[+] EMBL FR0060194 [ AAACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGGGGTCCCAGGGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2516#0 TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCC 60
consensus_2516#1 -----------------------------------------GCGACGGTGATTTACCTCC 19
*******************
consensus_2516#0 ACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACT 120
consensus_2516#1 ACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACT 79
************************************************************
consensus_2516#0 TATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCA 180
consensus_2516#1 TATTTACCCGGTG---------------------------------GCGCCAGACGGCCA 106
************* **************
consensus_2516#0 AGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCAT 240
consensus_2516#1 AGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCAT 166
******************************************** ***************
consensus_2516#0 TAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGA 300
consensus_2516#1 TAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGA 226
************************************************************
consensus_2516#0 CGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGT 360
consensus_2516#1 CGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGG 286
***********************************************************
consensus_2516#0 GGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCA 420
consensus_2516#1 GGTCCCAGGGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC- 345
******** **************************************************
consensus_2516#0 GTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCA 480
consensus_2516#1 ------------------------------------------------------------
consensus_2516#0 AGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCC 540
consensus_2516#1 ------------------------------------------------------------
consensus_2516#0 TCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTC 600
consensus_2516#1 ------------------------------------------------------------
consensus_2516#0 CACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA 640
consensus_2516#1 ----------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |