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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 670 fasta sequence
[CGCACCGAGAAGCTTCCAGGACGAAATTGGGACTTTCTGCACCGGCTGACTCACACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCAACCCATCGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTT-ATTTCTCGTGGCGTTGAGG-ACATGTCCCACCAGAGACCAACGTGTCACAACCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCACCATCATAACGCCCGCTGAG]
[+] EMBL CA590474 [CGCACCGAGAAGCTTCCAGGACGAAATTGGGACTTTCTGCACCGGCTGACTCACACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGGACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCCACCCATCGGCAAACCAAGGTGAAGAGCCCAGTGGCTATCTGAACATAGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTTAATTTCTCGGGGGGTTGAGGAAAATGTCCCCCCGAAGACCAAAGTGGCACAACCCGCAa ]
[+] EMBL BU805128 [ AATTGGGACTTTCTGCACCGGCTGACTCACACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCTAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGCTGGGCCAGCTGTTCCCAACCCATCGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTT ATATCTCGTGGCGTTGAGG ACATGTCCCACCAGAGACCAACGTGTCACAATCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTC ]
[+] EMBL CA588924 [ GTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGCCGGGCCAGCTGTTCCCAACCCATCGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTT ATTTCTCGTGGCGTTGAGG ACATGTCCCACCAGAGACCAACGTGTCACAACCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCACCATCATAACGCCCGCTGAG]
[+] EMBL FR0063869 [ CCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGA TTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGGCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGGATTGCTCCAGCTATTCCACTTTCTGG GGCTGGCCAGCTGGTCCCAACCCATCGGCAAAC ]
[+] EMBL CA591536 [ ACTCCTCAGAACTCTATCGCATCTCTACCTTCTCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGGTCTACACGGGGGTGGGCGACCGCGTGCAGTGTATCAAGTGCAACGTGACACCCGAGGGCTGGCAAGCTGGATACTGTCCCAACGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCATGCATCCAGAGCCTCCCGTCCACG ]
consensusID : consensus_2517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTATAATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTCATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTCACTAGAAATTGATGTGACTGATAAACAACTAAAAGGGCGAATTTGAAGTCATTCGTAATATCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTACACAATACTGAATAAGAGCCTAATGGGAAACACTGAAACTTCTTCGCTCTCTTTAGTGTGTCTGTGAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTTACTCTCATATTGCTCTGCTTTCATACAAAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTG]
[+] EMBL BU806218 [TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTATAATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTCATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTCACTAGAAATTGATGTGACTGATAAACAACTAAAAGGGCGAATTTGAAGTCATTCGTAATATCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTACACAATACTGAATAAGAGCCTAATGGGAAACACTGAAACTTCTTCGCTCTCTTTAGTGTGTCTGTGAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTTACTCTCATATTGCTCTGCTTTCATACAAAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTG]
consensusID : consensus_2517#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[ATGGGCTTTCTTCCCGCTGACTCACACAGCAGGTGGGGGGACATCCTGCTCTTTGCTCACCCTGACCCCCCCCTGTGAGGACCCACCTTTACTCTCATATTGCTCGGTATCATACAAAGATGGAAACAACTTGTTCAACTCAAGAACAACCCGTTTTTGATGTGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTATACCTTCGCGCGATTGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT]
[+] EMBL FR0058619 [ATGGGCTTTCTTCCCGCTGACTCACACAGCAGGTGGGGGGACATCCTGCTCTTTGCTCACCCTGACCCCCCCCTGTGAGGACCCACCTTTACTCTCATATTGCTCGGTATCATACAAAGATGGAAACAACTTGTTCAACTCAAGAACAACCCGTTTTTGATGTGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTATACCTTCGCGCGATTGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2517#1 TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTAT 60
consensus_2517#2 ------------------------------------------------------------
consensus_2517#0 ---CGCACCGAGAAGCTTCCAGG-ACGAAATTGGGACTTTCTGCACCGGCTG---ACTCA 53
consensus_2517#1 AATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTC 120
consensus_2517#2 ------------------------------------------------------------
consensus_2517#0 CACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTC 113
consensus_2517#1 ATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTC 180
consensus_2517#2 ------------------------------------------------------------
consensus_2517#0 GCAACTGTCCGCCACCTGACCTGCAGTATG-ACAACTCCTCAGAACTCTATCGCATCTCT 172
consensus_2517#1 ACTAGAAATTGATGT--GACTG-ATAAACAACTAAAAG--GGCGAATTTGAAGTCATTCG 235
consensus_2517#2 ------------------------------------------------------------
consensus_2517#0 ACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGG 232
consensus_2517#1 TAATATCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTA 295
consensus_2517#2 ------------------------------------------------------------
consensus_2517#0 TTCTACACGGGGGTGGGCGACCGCGTG-CAGTGTTTCAAGTGCAACGTGACAGCCGAGGG 291
consensus_2517#1 CACA-ATACTGAATAAGAGCCTAATGGGAAACACTGA-AACTTCTTCGCTCTCTTTAGTG 353
consensus_2517#2 -----------------------ATGGGCTTTCTTCC-CGCTGACTCACAC-----AGCA 31
consensus_2517#0 CTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTT 351
* ** * * *
consensus_2517#1 TGTCTGTGAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTT 413
consensus_2517#2 GGTGGGGGGACATCCTGCTCTTTGCTCA-CCCTGACCCCCCCCTGTGAGGACCCACCTTT 90
consensus_2517#0 CATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCC 411
* * * * *** ** ** * * * *
consensus_2517#1 ACTCTCATATTGCTCTGC---TTTCATACAAAGATGG-AAACA-CTTGTTC--AACTCAA 466
consensus_2517#2 ACTCTCATATTGCTCGG----TATCATACAAAGATGG-AAACAACTTGTTC--AACTCAA 143
consensus_2517#0 ACT-TCGTATTGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCAACCCAT 470
*** ** ******** * ** * *** * ***** *** **
consensus_2517#1 GAACAACCCGTTTTTGATGG------GGCTGTGT-----CGCAACTGTCCGCCACCTGAC 515
consensus_2517#2 GAACAACCCGTTTTTGATGT------GGCTGTGT-----CGCAACTGTCCGCCACCTGAC 192
consensus_2517#0 CGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCAC 530
*** ** * * **** * * * * ***** * **
consensus_2517#1 CTGCAGTATGACA-ACTCCTCAGAACTCTATCG-CATCTCT--------ACCTTCGCGCG 565
consensus_2517#2 CTGCAGTATGACA-ACTCCTCAGAACTCTATCG-CATCTAT--------ACCTTCGCGCG 242
consensus_2517#0 CCTCAAGCCCACTTATTTCTCGTGGCGTTGAGGACATGTCCCACCAGAGACCAACGTGTC 590
* ** ** * * *** * * * *** * *** ** *
consensus_2517#1 AT--TTCCGACTTCGGGGGTG--------------------------------------- 584
consensus_2517#2 AT--TGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT------- 293
consensus_2517#0 ACAACCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCA 650
* ** ** * * *
consensus_2517#1 --------------------
consensus_2517#2 --------------------
consensus_2517#0 CCATCATAACGCCCGCTGAG 670
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |