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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 786 fasta sequence
[CCGACGGTTGAGCTCTGCAGGACTTTCCAAACCAAGATGGCCAGCTGTTCAGGATGTGGACCCGGATACCGAAGTCCTCTGGACGCCATGAAAGGGCCTCGAGAGGAGATCGTGTACCTGCCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGTTGATGTCGACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGCGATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGGAAAAGAAACCGTCTGATTCTCCCGTCACTCATTTCTTCCAGGATCTATGTGGTCGACGTGGAAAC-GAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGTGGATTTGTTCTGGAAGTGTGGCCTTGCCAACCCTCATACCACCCACTGTTTGGGCAATGGTCAGGTTATGATCAGCTGTTTGGGAGACCCGTCTGGCAACGGCAAAGGGGGCTTTGTCCTGTTGGATGGTCAGACCTTTGATGTGGTTGGTAACTGGGAGCACCCGGGCGAAGCAGCACCATTTGGATACGACTTCTGGTACCAACCCCAACACAATGTGATGATCAGCACCGAGTGGGGCGCCCCCAAAGCTCTGGCAAATGGGTTCGATCCAGCTGATGTGGCAGGAGGTCATTACGGCAGCTGCCTCCATGTCTGGAACTGGGACACCCACAGGAAGCTGCAGACAATCGATCTGGGGAAGGACGGGGGAATTCCA]
[+] EMBL CA588175 [CCGATTGTTGAGCTCTGCAGGACTTTCCAAACCAAGATGGCCACCTTTTCAGGATGTGGACCCGGATACCGAAGTCCTCTGGACGCCATGAAAGGGCCTCGAGAGGAGATCGTGTACCTGCCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGTTGATGTCGACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGCGATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGGAAAAGAAACCGTCTGATTCTCCCGTCACTCATTTCTTCCAGGATCTATGTGGTCGACGTGGAAAC GAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGTGGATTTGTTCTGGAAGTGTGGCCTTGCCAACCCTCATACCACCCACTGTTTGGGCAATGGTCAGGTTATGATCAGCTGTTTGGGAGACCCGTCTGGCAACGGCAAAGGGGGCTTTGTCCTGTTGGATGGTCAGACCTTTGATGTGGTTGGTAACTGGGAGCACCCGGGCGAAGCAGCACCATTTGGATACGACTTCTGGTACCAACCCCAACACAATGTGATGATCAGCACCGAGTGGGGCGCCCCCAAAGCTCTGGCAAATGGGTTCGATCCAGCTGATGTGGCAGGAGGTCATTACGGCAGCTGCCTCCATGTCTGGAACTGGGACACCCACAGGAAGCTGCAGACAATCGATCTGGGGAAGGACGGGGGAATTCCA]
[+] EMBL CA589801 [ ACGGTTGAGCTCTGCAGGACTTTCCAAACCAAGATGGCCAGCTGTTCAGGATGTGGACCTGGATACCGAAGTCCTCTGGACGCCATGAAAGGGCCTCGAGAGGAGATCGTGTACCTGCCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGTTGATGTCGACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGCGATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGGAAAAGAAACCGTCTGATTCTCCCGTCACTCATTTCTTCCAGGATCTATGTGGTCGACGTGGAAAC GAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGTGGATTTGTTCTGGAAGTGTGGCCTTGCCAACCCTCATACCACCCACTGTTTGGGCAATGGTCAGGTTATGATCAGCTGTTTGGGAGACCCGTCTGGCAACGGCAAAGGGGGCTTTGTCCTGTTGGATGGTCAGACCTTTGATGTGGTTGGTAACTGGGAGCACCCGGGCGAAGCAGCACCATTTGGATACGACTTCTGGTACCAACCCCAACACAATGTGATGATCAGCACC ]
[+] EMBL CA591042 [ ACGGTTGAGCTCTGCAGGACTTTCCAAACCAAGATGGCCAGCTGTTCAGGATGTGGACCCGGATACCGAAGTCCTCTGGACGCCATGAAAGGGCCTCGAGAGGAGATCGTGTACCTGCCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGTTGATGTCGACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGCGATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGGAAAAGAAACCGTCTGATTCTCCCATCACTCATTTCTTCCAGGATCTATGTGGTCGACGTGGAAAC GAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGTGGATTTGTTCTGGAAGTGTGGCCTTGCCAACCCTCATACCACCCACTGTTTGGGCAATGGTCAGGTTATGATCAGCTGTTTGGGAGACCCGTCTGGCAACGGCAAAGGGGGCTTTGTCCTGTTGGATGGTCAGACCTTTGATGTGGTTGGTAACTGGGAGCACCCGGGC ]
[+] EMBL FR0059267 [ CAGCTGTTCAGGATGTGGACCCGGATACCGAAGTCCTCTGGACGCCATGAAAGGGCCTCGAGAGGAGATCGTGTACCTGCCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGTTGATGTCGACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGCGATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGGAAAAGAAACCGTCTGATTCTCCCATCACTCATTTCTTCCAGGATCTATGTGGTCGACGTGGAAACGGAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGg ]
consensusID : consensus_2518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 648 fasta sequence
[TGTCACCTCGGACCTCTTTTCTCTCAGCCAGCTGTTCAGGATGTGGACCCGGATACCGAAGTCCTCTGGACGCGGTGAAAGGGCC---TCGAGAGGAGATCGTGTACCTGCCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGTTGATGTCGACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGCGATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGGAAAAGAAACCGGCTGATTCTCCCATCACTCATTTCTTCCAGGATCTATGTGGTCGACGAGGAAACGAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGGGGAATTGGTCTGGAAGTGTGGGCTTGGCCAACCCTCATACCACCCACTGTTTGGGCAATGGTCAGGTTATGATCAGCTGTTTGGGAGACCCGTCTGGCAACGGCAAAGGGGGCTTTGTCCTGTTGGATGGTCAGACCTTTGATGTGGTTGGTAACTGGGAGCACCCGGGCGAAGCAGCACCATTTGGATACGACTTCTGGTACCAACCCCAACACAATGTGATGATCAGCACCGAGTGGGGCGCCCCCCAAACT]
[+] EMBL CA589553 [TGTCACCTCGGACCTCTTTTCTCTCAGCCAGCTGTTCAGGATGTGGACCCGGATACCGAAGTCCTCTGGACGCCATGAAAGGGCC TCGAGAGGAGATCGTGTACCTGCCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGTTGATGTCGACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGCGATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGGAAAAGAAACCGTCTGATTCTCCCGTCACTCATTTCTTCCAGGATCTATGTGGTCGACGTGGAAACGAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGTGGATTTGTTCTGGAAGTGTGGCCTT GCCAACCCTCATACCACCCACTGTTTGGGCAATGGTCAGGTTATGATCAGCTGTTTGGGAGACCCGTCTGGCAACGGCAAAGGGGGCTTTGTCCTGTTGGATGGTCAGACCTTTGATGTGGTTGGTAACTGGGAGCACCCGGGCGAAGCAGCACCATTTGGATACGACTTCTGGTACCAACCCCAACACAATGTGATGATCAGCACCGAGTGGGGCGCCCCCCAAACT]
[+] EMBL FR0059552 [ GGATGTGTACCCGGATACCGAAGTCCTCTGGACGCGGTGAAAGGGCC TCGAGAGGAGATCGTGTACCTGCCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGCTGATGTCGACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGCGATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGGAAAAGAAACCGGCTGATTCTCCCATCACTCATTTCTTCCAGGATCTATGTGGTCGACGAGGAAACGAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGGGGAATTGGTCTGGAAGTGTGGGCTTGGCCAACCCTCATAC ]
[+] EMBL FR0059206 [ TGAAAGGGCCTTTTATGTAGGAGATCGTGTATCTGCCCTGCATCTACCGCAACACTAACACTTCAAAACCCGACTATCTTGCCACGGTTGATGTCGACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGCGATGAGCTCCATCACTCAGGGNGGAATGCCTGCAGCAACTGCTTTGGTGATGCCTCCAGGAAAAGAAAACCGCTGATTCTCCCATCACTCAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2518#0 CCGACGGTTGAGCTCTGCAGGACTTTCCAAACCAAGATGGCCAGCTGTTCAGGATGTGGA 60
consensus_2518#1 ---------TGTCACCTCGGACCTCTTTTCTCTCAG----CCAGCTGTTCAGGATGTGGA 47
* * * * ** * * ** ********************
consensus_2518#0 CCCGGATACCGAAGTCCTCTGGACGCCATGAAAGGGCCTCGAGAGGAGATCGTGTACCTG 120
consensus_2518#1 CCCGGATACCGAAGTCCTCTGGACGCGGTGAAAGGGCCTCGAGAGGAGATCGTGTACCTG 107
************************** ********************************
consensus_2518#0 CCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGTTGATGTC 180
consensus_2518#1 CCCTGCATCTACCGCAACACTAACACTTTAAAACCCGACTATCTTGCCACGGTTGATGTC 167
************************************************************
consensus_2518#0 GACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGC 240
consensus_2518#1 GACCCCAAATCCTCCACATACTGTCAGGTGATCCACCGGCTGCCGATGCCCAACCTCTGC 227
************************************************************
consensus_2518#0 GATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGG 300
consensus_2518#1 GATGAGCTCCATCACTCAGGGTGGAATGCCTGCAGCAGCTGCTTTGGTGATGCCTCCAGG 287
************************************************************
consensus_2518#0 AAAAGAAACCGTCTGATTCTCCCGTCACTCATTTCTTCCAGGATCTATGTGGTCGACGTG 360
consensus_2518#1 AAAAGAAACCGGCTGATTCTCCCATCACTCATTTCTTCCAGGATCTATGTGGTCGACGAG 347
*********** *********** ********************************** *
consensus_2518#0 GAAACGAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGTGGATTTGTTCTGG 420
consensus_2518#1 GAAACGAATCCCAGAGCTCCGCAGATCCACAAGATAGTGGAACCAGGGGAATTGGTCTGG 407
********************************************** *** *** *****
consensus_2518#0 AAGTGTGGCCTTG-CCAACCCTCATACCACCCACTGTTTGGGCAATGGTCAGGTTATGAT 479
consensus_2518#1 AAGTGTGGGCTTGGCCAACCCTCATACCACCCACTGTTTGGGCAATGGTCAGGTTATGAT 467
******** **** **********************************************
consensus_2518#0 CAGCTGTTTGGGAGACCCGTCTGGCAACGGCAAAGGGGGCTTTGTCCTGTTGGATGGTCA 539
consensus_2518#1 CAGCTGTTTGGGAGACCCGTCTGGCAACGGCAAAGGGGGCTTTGTCCTGTTGGATGGTCA 527
************************************************************
consensus_2518#0 GACCTTTGATGTGGTTGGTAACTGGGAGCACCCGGGCGAAGCAGCACCATTTGGATACGA 599
consensus_2518#1 GACCTTTGATGTGGTTGGTAACTGGGAGCACCCGGGCGAAGCAGCACCATTTGGATACGA 587
************************************************************
consensus_2518#0 CTTCTGGTACCAACCCCAACACAATGTGATGATCAGCACCGAGTGGGGCGCCCCCAAAGC 659
consensus_2518#1 CTTCTGGTACCAACCCCAACACAATGTGATGATCAGCACCGAGTGGGGCGCCCCCCAAAC 647
******************************************************* ** *
consensus_2518#0 TCTGGCAAATGGGTTCGATCCAGCTGATGTGGCAGGAGGTCATTACGGCAGCTGCCTCCA 719
consensus_2518#1 T----------------------------------------------------------- 648
*
consensus_2518#0 TGTCTGGAACTGGGACACCCACAGGAAGCTGCAGACAATCGATCTGGGGAAGGACGGGGG 779
consensus_2518#1 ------------------------------------------------------------
consensus_2518#0 AATTCCA 786
consensus_2518#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |