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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 583 fasta sequence
[GGAGAACAGGAGCGTTTCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATTGGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTAGACCTGAGGCGGCGCCAGGTCCAGCACC-GAAAGAGACTCCAGAACAAAAGCTGCTTTGACCGTCTTTGTTTCTCTGCTCACTCCAGCCCGGCGCCTCCCGGCCAGAACCCCGAGCTCTCGTTCTTGTCTCGTTGTCTTTGCGTGTGGAGACCCAAGTGTCCTATGCACTCTGCCTGC]
[+] EMBL CA588997 [GGAGAACAGGAGCGTTTCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATTGGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGCAGACCTGAGGCGGCGCCAGGTCCAGCACC GAAAGAGACTCCAGAACAAAAGCTGCTTTGACCGTCTTTGTTTCTCTGCTCACTCCAGCCCGGCGCCTCCCGGCCAGAACCCCGAGCTCTCGTTCTTGT ]
[+] EMBL FR0062353 [GGAGAACAGGAGCGTTTCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATTGGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGGGCTGGAGAACCAGAACAAGACCCTGATGGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACNAAGCTtgag ]
[+] EMBL CA333506 [ TCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATTGGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTAGACCTGAGGCGGCGCCAGGTCCAGCACC GAAAGAGACTCCAGAACAAAAGCTGCTTTGACCGTCTTTGTTTCTCTGCTCACTCCAGCCCGGCGCCTCCCGGCCAGAACCCCGAGCTCTCGTTCTTGTCTCGTTGTCTTTGCGTGTGGAGACCCAAGTGTCCTATGCACTCTGCCTGC]
[+] EMBL FR0063600 [ CCGCTGAGGTGACTCTGCTGCCGCGGCGCTGGATTATTGGACCGAAGACATGGCTGGGGGGGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGGGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTAGACCTGAGGCGGCGCCAGGTCCAGCACCGGAAAGAGACTCCAGAACAAAAGCT ]
[+] EMBL FR0055870 [ GGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGGGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTACACCTGAGGCGGTGCCAGGTCCAGCACC GACTGAGACTCCAGAGCAGAAGCTGCTTTGACCGTCTTTGTTTCTCTGCTCACTCCATC ]
consensusID : consensus_2520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 404 fasta sequence
[GCAGAGCAGTTTAAAGTTGGCTCGCGAGGGTTTCAAGAGAATCACGGTCCAAAATTAGCAGCTCGGCACCGTCCGGTGGTCCTGCGGCAACAGGCGGCCCGCCGACACCCACCTGTTGCCCGGAGACAACAGCCAGGAATACGGGGGAGTGCGGCTAATAGGGCGGAGGAACAGCAAGAAAACAGCGTGTTCACTTTTAATTAAGGAACTATAAAAAAGTCACCTGGAAGAACGTTCGCAATCGGTCAGCTGACCTCTACCGGGCTCTCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGGTCCATGCAGACCTCCACCTTCGACCAGGCCGAGGAGATCACCCGGAAGAG]
[+] EMBL BU807994 [GCAGAGCAGTTTAAAGTTGGCTCGCGAGGGTTTCAAGAGAATCACGGTCCAAAATTAGCAGCTCGGCACCGTCCGGTGGTCCTGCGGCAACAGGCGGCCCGCCGACACCCACCTGTTGCCCGGAGACAACAGCCAGGAATACGGGGGAGTGCGGCTAATAGGGCGGAGGAACAACAAGAAAACAGCGTGTTCACTTTTAATTAA ]
[+] EMBL FR0059941 [ GCACCGTCCGGTGGTCCTGCGGCAACAGGCGGCCCGCCGACACCCACCTGTTGCCCGGAGACAACAGCCAGGAATACGGGGGAGTGCGGCTAATAGGGCGGAGGAACAGCAAGAAAACAGCGTGTTCACTTTTAATTAAGGAACTATAAAAAAGTCACCTGGAAGAACGTTCGCAATCGGTCAGCTGACCTCTACCGGGCTCTCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGGTCCATGCAGACCTCCACCTTCGACCAGGCCGAGGAGATCACCCGGAAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2520#0 GGAGAACAGGAGCGTTTCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATT 60
consensus_2520#1 ------------------------------------------------------------
consensus_2520#0 GGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGC 120
consensus_2520#1 --------------------------------GCAGAG-CAGTT--TAAAGTTGGCTCGC 25
* *** *** * ** ** * * **
consensus_2520#0 CCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCT 180
consensus_2520#1 GAGGGTTTCAA--GAGAATCACGGTCCAAAATTAGCAGCTCGGCACCGT--CCGGTGG-T 80
* ** *** * * ** * ** * *** *** ** *
consensus_2520#0 CCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAG 240
consensus_2520#1 CCTGCGGCAACAGGCGGCCCGCCGACACCCACCTG----------TTGCCCGGAGACAAC 130
** *** ** ** * ** ** * * **** * * ****** *
consensus_2520#0 AGGTCCGGCTGATGAAGAACAGGGA-GGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAG 299
consensus_2520#1 AGCCAGGAATACGGGGGAGTGCGGCTAATAGGGCGGAGGAACAGCAAGAAAAC-AGCGTG 189
** * * * ** ** ** **** * *** ***** * * *
consensus_2520#0 TACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATC 359
consensus_2520#1 TTCA-CTTTTAATTAAGGAACTATAAAAAAGTCACCTGGAA---GAAC--GTTCGCAATC 243
* * * * * **** ** *** **** * * ***
consensus_2520#0 GAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTAGACCTGAGGCGGC 419
consensus_2520#1 GGTCAGCTGAC--CTCTACCGGGCTCT--CTGCTACAGG-------AGACATGCCCACCT 292
* ****** * ** * * * **** *** * **** **
consensus_2520#0 GCCAGGTCCAGCACCGAAAGAGACTCCAGAACAAAAGCTGCTTTGACCGTCTTTGTTTCT 479
consensus_2520#1 ACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGC-ATCGTGATCGCCACC-TCCCA 350
**** * * ** ** ** * * * *** *** ** * * *
consensus_2520#0 CTGCTCACTCCAGCCCGGCGCCTCCCGGCCAGAACCCCGAGCTCTCGTTCTTGTCTCGTT 539
consensus_2520#1 GGGGTCCATGCAGACCTCCACCTTC-GACCAGGCCGAGGAGATCACCCGGAAGAG----- 404
* ** * *** ** * *** * * **** * *** ** * *
consensus_2520#0 GTCTTTGCGTGTGGAGACCCAAGTGTCCTATGCACTCTGCCTGC 583
consensus_2520#1 --------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |