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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 727 fasta sequence
[CAGTTTGCTTTCTGGAGTCCCCTGAAGCAGCTTGTCACTCTTCCTCGCGCACGTTGATCCAACTTTCAGGATGACTCATCAATTCCCATCGCTGTCTACGGAGCAGAAGAAGGCGCTCTCTGACATTGCTCAGAGAATTGTGGCTCCAGGAAAGGGAATCCTGGCTGCCGATGAGTCAACAGGAACCATGGCGAAACGTCTGCAGAAGATCAACGTGGAGAACACAGAGGAAAACCGTCGCACATTCCGTGACATCCTCTTCTCCTCCGATGCCTCCATGTCCACCTGCGTGGGCGGGGTCATCTTCTTCCACGAGACGCTCTACCAGAAGTCGAACAGTGGCAAGCTCTTCCCCCAGGTCATCAAGGATAAGGGCATTGTCGTCGGCATCAAGGTGGACAAAGGCACAGCTGGTCTAAATGGAACAGACGGAGAGACCACCACACAAGGTCTTGATGGGCTGTCGGAGCGCTGCGCCCAGTATAAAAAGGATGGTTGTGACTTCGCCAAGTGGAGGTGCGTGCTCAAGATCTCAGATAGCTGCCCCTCGGCTCTTGCCATTGCGGAGAACGCCAACGTGCTGGCCAGATACGCTAGCATCTGTCAACAGAATGGACTGGTGCCTATCGTGGAGCCAGAGATCCTTCCCGATGGAGACCACGACCTGCAGCGTTTGCAGTACGTCACAGAAAAGGTGCTGGCAGCCGTCTACCAGGCCCTGTCTGAT]
[+] EMBL CA590917 [CAGTTTGCTTTCTGGAGTCCCCTGAAGCAGCTTGTCACTCTTCCTCGCGCACGTTGATCCAACTTTCAGGATGACTCATCAATTCCCATCGCTGTCTACGGGGCAGAAGAAGGCGCTCTCTGACATTGCTCAGAGAATTGTGGCTCCAGGAAAGGGAATCCTGGCTGCCGATGAGTCAACAGGAACCATGGCGAAACGTCTGCAGAAGATCAACGTGGAGAACACAGAGGAAAACCGTCGCACATTCCGTGACATCCTCTTCTCCTCCGATGCCTCCATGTCCACCTGCGTGGGCGGGGTCATCTTCTTCCACGAGACGCTCTACCAGAAGTCGAACAGTGGCAAGCTCTTCCCCCAGGTCATCAAGGATAAGGGCATTGTCGTCGGCATCAAGGTGGACAAAGGCACAGCTGGTCTAAATGGAACAGACGGAGAGACCACCACACAAGGTCTTGATGGGCTGTCGGAGCGCTGCGCCCAGTATAAAAAGGATGGTTGTGACTTCGCCAAGTGGAGGTGCGTGCTCAAGATCTCAGATAGCTGCCCCTCGGCTCTTGCCATTGCGGAGAACGCCAACGTGCTGGCCAGATACGCTAGCATCTGTCAACAGAATGGACTGGTGCCTATCGTGGAG ]
[+] EMBL CA846996 [ CTGAAGCAGCTTGTCACTCTTCCTCGCGCACGTTGATCCAACTTTCAGGATGACTCATCAATTCCCATCGCTGTCTACGGAGCAGAAGAAGGCGCTCTCTGACATTGCTCAGAGAATTGTGGCTCCAGGAAAGGGAATCCTGGCTGCCGATGAGTCAACAGGAACCATGGCGAAACGTCTGCAGAAGATCAACGTGGAGAACACAGAGGAAAACCGTCGCACATTCCGTGACATCCTCTTCTCCTCCGATGCCTCCATGTCCACCTGCGTGGGCGGGGTCATCTTCTTCCACGAGACGCTCTACCAGAAGTCGAACAGTGGCAAGCTCTTCCCCCAGGTCATCAAGGATAAGGGCATTGTCGTCGGCATCAAGGTGGACAAAGGCACAGCTGGTCTAAATGGAACAGACGGAGAGACCACCACACAAGGTCTTGATGGGCTGTCGGAGCGCTGCGCCCAGTATAAAAAGGATGGTTGTGACTTCGCCAAGTGGAGGTGCGTGCTCAAGATCTCAGATAGCTGCCCCTCGGCTCTTGCCATTGCGGAGAACGCCAACGTGCTGGCCAGATACGCTAGCATCTGTCAACAGAATGGACTGGTGCCTATCGTGGAGCCAGAGATCCTTCCCGATGGAGACCACGACCTGCAGCGTTTGCAGTACGTCACAGAAAAGGTGCTGGCAGCCGTCTACCAGGCCCTGTCTGAT]
[+] EMBL CA330962 [ CTGAAGCAGCTTGTCACTCTTCCTCGCGCACGTTGATCCAACTTTCAGGATGACTCATCAATTCCCATCGCTGTCTACGGAGCAGAAGAAGGCGCTCTCTGACATTGCTCAGAGAATTGTGGCTCCAGGAAAGGGAATCCTGGCTGCCGATGAGTCAACAGGAACCATGGCGAAACGTCTGCAGAAGATCAACGTGGAGAACACCGAGGAAAACCGTCGCACATTCCGTGACATCCTCTTCTCCTCCGATGCCTCCATGTCCACCTGCGTGGGCGGGGTCATCTTCTTCCACGAGACGCTCTACCAGAAGTCGAACAGTGGCAAGCTCTTCCCCCAGGTCATCAAGGATAAGGGCATTGTCGTCGGCATCAAGGTGGACAAAGGCACAGCTGGTCTAAATGGAACAGACGGAGAGACCACCACACAAGGTCTTGATGGGCTGTC ]
consensusID : consensus_2522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 690 fasta sequence
[ACAGAAAAGGTGCTGGCAGCCGTCTACAAGGCCCTGTCTGATCACCACGTGTACCTGGAGGGAACACTGCTGAAGCCCAACATGGTCACTGCTGGACACGCCTGCACCAAGAAGTTCACCCCTCAGCAAGTCGCCATGGCCACAGTGTCCGCTCTGAGGCGCACTGTCCCCGCTGCAGTCCCCGGCATCTGCTTCCTGTCTGGAGGCCAGAGTGAGGAAGAGGCCTCCATCAACCTGAGTGCCATCAACCAGGTGCCTCTCCACCGCCCCTGGAAGTTGACCTTCTCCTATGGCCGTGCACTCCAGGCCTCTTCTCTCGCTGCCTGGCAGGGCAAAGCAGAAAACAGAGCAGCTGCACAAGAAGCTTTCTGCAAAAGGGCAAAGATCAACGGGCTGGCTTCCAAAGGAGAATACAACCCCAGTGGCTCTGCTGACCAGGCCTCCATGCAGTCTCTCTACACAGCTAGCTATGTTTATTAAATACTGTGACGACTAAAATACAAACTCATGGGACCAATTATCAATGCAACAACTTCTCGGAATTCCCCTTTTTCGTGAACGACCACCAGGGGGAGCCATATGACTGTAAACTACTGATTGTGTGTTAAGTGTAGTTGGAAATAAAGTGACCAAAATGTTAAAAAAAAAAAAAAAAAAACCTCAAGGGGGGGCCCGGTCCCAAGTTTTGGG]
[-] EMBL CA331130 [ACAGAAAAGGTGCTGGCAGCCGTCTACAAGGCCCTGTCTGATCACCACGTGTACCTGGAGGGAACACTGCTGAAGCCCAACATGGTCACTGCTGGACACGCCTGCACCAAGAAGTTCACCCCTCAGCAAGTCGCCATGGCCACAGTGTCCGCTCTGAGGCGCACTGTCCCCGCTGCAGTCCCCGGCATCTGCTTCCTGTCTGGAGGCCAGAGTGAGGAAGAGGCCTCCATCAACCTGAGTGCCATCAACCAGGTGCCTCTCCACCGCCCCTGGAAGTTGACCTTCTCCTATGGCCGTGCACTCCAGGCCTCTTCTCTCGCTGCCTGGCAGGGCAAAGCAGAAAACAGAGCAGCTGCACAAGAAGCTTTCTGCAAAAGGGCAAAGATCAACGGGCTGGCTTCCAAAGGAGAATACAACCCCAGTGGCTCTGCTGACCAGGCCTCCATGCAGTCTCTCTACACAGCTAGCTATGTTTATTAAATACTGTGACGACTAAAATACAAACTCATGGGACCAATTATCAATGCAACAACTTCTCGGAATTCCCCTTTTTCGTGAACGACCACCAGGGGGAGCCATATGACTGTAAACTACTGATTGTGTGTTAAGTGTAGTTGGAAATAAAGTGACCAAA ]
[-] EMBL CA332424 [ TACAAGGCCCTGTCTGATCACCACGTGTACTTGGAGGGAACACTGCTGAAGCCCAACATGGTCACTGCTGGACACGCCTGCACCAAGAAGTTCACCCCTCAGCAAGTCGCCATGGCCACAGTGTCCGCTCTGAGGCGCACTGTCCCCGCTGCAGTCCCCGGCATCTGCTTCCTGTCTGGAGGCCAGAGTGAGGAAGAGGCCTCCATCAACCTGAGTGCCATCAACCAGGTGCCTCTCCACCGCCCCTGGAAGTTGACCTTCTCCTATGGCCGTGCACTCCAGGCCTCTTCTCTCGCTGCCTGGCAGGGCAAAGCAGAAAACAGAGCAGCTGCACAAGAAGCTTTCTGCAAAAGGGCAAAGATCAACGGGCTGGCTTCCAAAGGAGAATACAACCCCAGTGGCTCTGCTGACCAGGCCTCCATGCAGTCTCTCTACACAGCTAGCTATGTTTATTAAATACTGTGACGACTAAAATACAAACTCATGGGACCAATTATCAATGCAACAACTTCTCGGAATTCCCCTTTTTCGTGAACGACCACCAGGGGGAGCCATATGACTGTAAACTACTGATTGTGTGTTAAGTGTAGTTGGAAATAAAGTGACCAAAAT ]
[+] EMBL FR0057056 [ AAAGGGCAAAGATCAACGGGCTGGCTTCCAAAGGAGAATACAACCCCAGTGGCTCTGCTGACCAGGCCTCCATGCAGTCTCTCTACACAGCTAGCTATGTTTATTAAATACTGTGACGACTAAAATACAAACTCATGGGACCAATTATCAATGCAACAACTTCTCGGAATTCCCCTTTTTCGTGAACGACCACCAGGGGGAGCCATATGACTGTAAACTACTGATTGTGTGTTAAGTGTAGTTGGAAATAAAGTGACCAAAATGTTAAAAAAAAAAAAAAAAAAACCTCAAGGGGGGGCCCGGTCCCAAGTTTTGGG]
[+] EMBL CA330923 [ gcACGAGCTGGCTTCCAAAGGAGAATACAACCCCAGTGGCTCTGCTGACCAGGCCTCCATGCAGTCTCTCTACACAGCTAGCTATGTTTATTAAATACTGTGACGACTAAAATACAAACTCATGGGACCAATTATCAATGCAACAACTTCTCGGAATTCCCCTTTTTCGTGAACGACCACCAGGGGGAGCCATATGACTGTAAACTACTGATTGTGTGTTAAGTGTAGTTGGAAATAAAGTGACCAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2522#0 -CAGTTTGCTTTCTGG-AGTCCCCTGAAGCAGCTTGTCACTCTTCCTCGCGCACGTTGAT 58
consensus_2522#1 ACAGAAAAGGTGCTGGCAGCCGTCTACAAGGCCCTGTCTGATCACCACGTGTACCTGGAG 60
*** * **** ** * ** * * **** ** ** * ** * **
consensus_2522#0 CCAACTTTCAGGATGACTCATCAATTCCCATCGCTGTCTACG---GAGCAGAAGAAGGCG 115
consensus_2522#1 GGAACACTGCTGAAGCCCAAC--ATGGTCACTGCTGGACACGCCTGCACCAAGAAGTTCA 118
*** * ** * * * ** ** **** *** * * * * *
consensus_2522#0 CTCTCTGACA--TTGCTCAGAGAATTGTGGCTCCAGGAAAGGGAATCCTGGCTGCCGATG 173
consensus_2522#1 CCCCTCAGCAAGTCGCCATGGCCACAGTGTCCGCTCTGAGGCGCACTGTCCCCGCTG--C 176
* * ** * ** * * *** * * * * * * * * ** *
consensus_2522#0 AGTCAACAGGAACCATGGCGAAACGTCTGCAGA--AGATCAACGTGGAGAACACAGAGGA 231
consensus_2522#1 AGTCCCCGGCATCTGCTTCC---TGTCTGGAGGCCAGAGTGAGGAAGAGGCCTCCATCAA 233
**** * * * * * ***** ** *** * * *** * * *
consensus_2522#0 AAACCGTCGCACATTCCGTGACATCCTCTTCTCCTCCGATGCCTCCATGTCCACCTGCGT 291
consensus_2522#1 CCTGAGTGCCATCAACCAGGTGCCTCTCCACCGCCCCTGGAAGTTGACCTTCTCCTATGG 293
** ** ** * *** * * ** * * * * *** *
consensus_2522#0 GGGCGGGGTC-ATCTTCTTCCACGAGACGCTCTACCAGAAGTCGAACAGTGGCAAGCTCT 350
consensus_2522#1 CCGTGCACTCCAGGCCTCTTCTCTCGCTGCCTGGCAGGGCAAAGCAGAAAACAGAGCAGC 353
* * ** * * * * * ** * * * * * ***
consensus_2522#0 TCCCCCAGGT-CATCAAGGATAAGGGCATTGTCGTCGGCATCAAGGTGGACAAAGGCACA 409
consensus_2522#1 TGCACAAGAAGCTTTCTGCAAAAGGGCAAAG--ATCAACGGGCTGGCTTCCAAAGGAGAA 411
* * * ** * * * * ******* * ** * ** ****** *
consensus_2522#0 GCTGGTCTAAATGGAACAGACGGAGAGACCACCACACAAGGTCTTGATGGGCTGTCGGAG 469
consensus_2522#1 TACAACCCCAGTGGCTCTGCTGACCAGGCCTCCATGCAGTCTCTCTACA------CAGCT 465
* * *** * * * ** ** *** ** *** * * *
consensus_2522#0 CGCTGCGCCCAGTATAAAAAGGATGGTTGTGACTTCGCCAAGTGGAGGTGCGTGCTCAAG 529
consensus_2522#1 AGCTATGTTTATT-----AAATACTGTGACGACTAAA--ATACAAACTCATGGGACCAAT 518
*** * * * ** * ** **** * * * * ***
consensus_2522#0 ATCTCAGATAGCTGCCCCTCGGCTCTTGCCATTGCGGAGAACGCCAACGTGCTGGCCAGA 589
consensus_2522#1 TATCAATGCAACAACTTCTCGGAATTCCCCTTTTTCGTGAACGACCACCAGGGGGAGCCA 578
* * * * ***** * ** ** * ***** * ** * ** *
consensus_2522#0 TACGCTAGCATCTGTCAACAGAATGGACTGGTGCCTATCGTGGAGCCAGAGATCCTTCCC 649
consensus_2522#1 TATGA------CTGTAAAC--TACTGATTG-TGTGTTAAGTGTAGTTGGAAAT------- 622
** * **** *** * ** ** ** * *** ** ** **
consensus_2522#0 GATGGAGACCACGACCTGCAGCGTTTGCAGTACGTCACAGAAAAGGTGCTGGCAGCCGTC 709
consensus_2522#1 -AAAGTGACCAAAATGTTAAAAAAAAAAAAAAAAAAACCTCAAGGGGG-----GGCCCGG 676
* * ***** * * * * * ** ** ** * ***
consensus_2522#0 TACCAGGCCCTGTCTGAT 727
consensus_2522#1 TCCCAAGTTTTGGG---- 690
* *** * **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |