cluster # 2525

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Takifugu rubripes
cluster # 2525 cluster # 2525 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2525#0 length = 647 sequences # 5

consensus_2525#1 length = 392 sequences # 1
consensus_2525#2 length = 341 sequences # 1

consensusID : consensus_2525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 647
fasta sequence

                              [CTCGTCTCTGCTCTTACTCACCGAACACAAGTGCCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA-TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGT-GAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGATGATGAGGAAACTCATATCCTTATTGTGGAAGGCTTCCTGCTTTACACCTACAGGCCTTTGATCGACGTGTTGAATCAGCGCTACTTCATTTCCATCCCATATGAAGAATGCAAAAAGACGAGGAGCTCAAGACACTACACAAGTTCAGACCCGCCCGGCCTGTTCGATGGC]

[+] EMBL FR0058327            [CTCGTCTCTGCTCTTACTCACCGAACACAAGTGCCATGGAGGCGACAAGTAGTGGACGTTTCCTGCCGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACAT                                                                                                                                                                                                                                                                                            ]
[+] EMBL FR0063074            [             TTACTCACCGAACACAAGTGCCATGGAGGCGACAAGTAGGGGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGT GAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGAT                                                                                                                                                                           ]
[+] EMBL FR0055736            [                        tCACAAGTGCCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAACATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTTGAGAACCCAGTGGAAGTTTGTGAAGTCTCACGGGGTTAATA                                                                                                                                                                                                                 ]
[+] EMBL FR0056293            [                                 CCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGT GAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGATGATGAGGAAACTCATATCCTTATTGTGGAAGGCTTCCTGCTTTACACCTACAGGCCTTTGATCGACGTGTTGAATCAGCGCTACTTCATTTCCATCCCATATGAAGAATGCAAAAAGACGAGGAGCTCAAGACACTACACAAGTTCAGACCCGCCCGGCCTGTTCGATGGC]
[+] EMBL FR0056051            [                                   ATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACANGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGT GAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGAT                                                                                                                                                                           ]




>consensus_2525#0
CTCGTCTCTGCTCTTACTCACCGAACACAAGTGCCATGGAGGCGACAAGTAGTTGACGTT
TCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTT
ATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTACGATCTTCGACCATCTCCAAACA
TGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACA
GACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCAC
AAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGG
ACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGTGAAGTTTGAGA
AGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGATGATG
AGGAAACTCATATCCTTATTGTGGAAGGCTTCCTGCTTTACACCTACAGGCCTTTGATCG
ACGTGTTGAATCAGCGCTACTTCATTTCCATCCCATATGAAGAATGCAAAAAGACGAGGA
GCTCAAGACACTACACAAGTTCAGACCCGCCCGGCCTGTTCGATGGC

consensusID : consensus_2525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [CCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGTGAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGGCAAAGTCTGACAATAAGG]

[+] EMBL FR0056584            [CCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGTGAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGGCAAAGTCTGACAATAAGG]




>consensus_2525#1
CCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATT
CCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTATTTTT
TTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCA
ATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGG
TTCACCAGGATGACTTCTTCAAGTCATCACGGCTTTGGACATGGACGCCATGATGAGTAC
GATCTACGCATGGTTGGAGAACCCAGTGAAGTTTGAGAAGTCTCACGGCGTTAATAACAC
CCTGGAGATCATGGCAAAGTCTGACAATAAGG

consensusID : consensus_2525#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [TTCCATCCCATATGAAGAATGCAATCAGAGGAGGAGCTCAAGAAACTACACAGTTCCAGACCCGCCCGGGCTGTTCGATGGCCACGTCTGGCCTATGTACCTGACACACACGGACATCATGGTGGAATCAGATGTAGATGTCTTGCAGCTTGATGGGAACAAGGTCAAAGGAGCAGCTGTTCAACTTTGTCTATAGTGACGTCCTGAACAACATCCAGAAGTCTCTATAGATGACTGAATTGGATCAGAGGAAGATATACTCAGCTTGCACGCAGACAAATGCCTTGCCTTAAGTTTCTACCTGGCAGCTCATTTACCAGACTGCTATGATATTTATGTAA]

[+] EMBL FR0055448            [TTCCATCCCATATGAAGAATGCAATCAGAGGAGGAGCTCAAGAAACTACACAGTTCCAGACCCGCCCGGGCTGTTCGATGGCCACGTCTGGCCTATGTACCTGACACACACGGACATCATGGTGGAATCAGATGTAGATGTCTTGCAGCTTGATGGGAACAAGGTCAAAGGAGCAGCTGTTCAACTTTGTCTATAGTGACGTCCTGAACAACATCCAGAAGTCTCTATAGATGACTGAATTGGATCAGAGGAAGATATACTCAGCTTGCACGCAGACAAATGCCTTGCCTTAAGTTTCTACCTGGCAGCTCATTTACCAGACTGCTATGATATTTATGTAA]




>consensus_2525#2
TTCCATCCCATATGAAGAATGCAATCAGAGGAGGAGCTCAAGAAACTACACAGTTCCAGA
CCCGCCCGGGCTGTTCGATGGCCACGTCTGGCCTATGTACCTGACACACACGGACATCAT
GGTGGAATCAGATGTAGATGTCTTGCAGCTTGATGGGAACAAGGTCAAAGGAGCAGCTGT
TCAACTTTGTCTATAGTGACGTCCTGAACAACATCCAGAAGTCTCTATAGATGACTGAAT
TGGATCAGAGGAAGATATACTCAGCTTGCACGCAGACAAATGCCTTGCCTTAAGTTTCTA
CCTGGCAGCTCATTTACCAGACTGCTATGATATTTATGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2525#0      CTCGTCTCTGCTCTTACTCACCGAACACAAGTGCCATGGAGGCGACAAGTAGTTGACGTT 60
consensus_2525#1      ---------------------------------CCATGGAGGCGACAAGTAGTTGACGTT 27
consensus_2525#2      ------------------------------------------------------------
                                                                                  

consensus_2525#0      TCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTT 120
consensus_2525#1      TCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTT 87
consensus_2525#2      ---------TTCCATCCCATATGAAG----AATGCAATCAGAGGAGGAGCTCAAGAAACT 47
                                 ** ** * * *****    * * *  ** **  *   * *        *

consensus_2525#0      ATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTACGATCTTCGACCATCTCCAAACA 180
consensus_2525#1      ATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTACGATCTTCGACCATCTCCAAACA 147
consensus_2525#2      AC--ACAGTTCCAGACCC----GCCCGGGCTGTTCGATGGCCACGTCTGGCCTATGTACC 101
                      *   **  **  * *        *      * **  * *  *         **    ** 

consensus_2525#0      TGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCT-CACCAAC 239
consensus_2525#1      TGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCT-CACCAAC 206
consensus_2525#2      TGACACACACGGACATCAT-GGTGGAATCAGATGTAGATGTCTTGCAGCTTGATGGGAAC 160
                      ***   ***    *  *** ** **  * *    * ** *     *  *        ***

consensus_2525#0      AGACTCATCA-AGAACCTGCCCAACTGT-TGTGTGGT--TCACCAGGATGACTTCTTCAA 295
consensus_2525#1      AGACTCATCA-AGAACCTGCCCAACTGT-TGTGTGGT--TCACCAGGATGACTTCTTCAA 262
consensus_2525#2      AAGGTCAAAGGAGCAGCTGTTCAACTTTGTCTATAGTGACGTCCTGAACAACATCCAGAA 220
                      *   ***    ** * ***  ***** * * * * **     ** * *  ** **   **

consensus_2525#0      GCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGC 355
consensus_2525#1      G-------------------------------------------------TCATCACGGC 273
consensus_2525#2      GTCTCTATA------------------------------------------GATGACTGA 238
                      *                                                   ** ** * 

consensus_2525#0      TTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGTGAAGTT 415
consensus_2525#1      TTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGTGAAGTT 333
consensus_2525#2      ATTGGAT-CAGAGG--AAGATATACTCAGCTTGCACGCAGACAAATGCCTTGCCTTAAGT 295
                       *****    ** *  * ***     *    * * *   *    *   *       *  *

consensus_2525#0      TGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGA 475
consensus_2525#1      TGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGGCAAAGTCTGACAATAAGG- 392
consensus_2525#2      TTCTACCTGGCAGCTCATTTACCAGACTGCTATGATATTTATGTAA-------------- 341
                      *   *  *  **   * ** *  * **      ***  *     *               

consensus_2525#0      TGATGAGGAAACTCATATCCTTATTGTGGAAGGCTTCCTGCTTTACACCTACAGGCCTTT 535
consensus_2525#1      ------------------------------------------------------------
consensus_2525#2      ------------------------------------------------------------
                                                                                  

consensus_2525#0      GATCGACGTGTTGAATCAGCGCTACTTCATTTCCATCCCATATGAAGAATGCAAAAAGAC 595
consensus_2525#1      ------------------------------------------------------------
consensus_2525#2      ------------------------------------------------------------
                                                                                  

consensus_2525#0      GAGGAGCTCAAGACACTACACAAGTTCAGACCCGCCCGGCCTGTTCGATGGC 647
consensus_2525#1      ----------------------------------------------------
consensus_2525#2      ----------------------------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)