These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 579 fasta sequence [CTCCAGACACCGACCGTCTTCAGACCCTGACACAGCACCTCGGCTCCCGGAGCGAGTGCATCGACGCAGAGAGACCGAACCGATTCGGATTTACCCTC--AACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGGAGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAAGAACCTGGCCAGTCCTGAACAGCTGGAGAAGTTCCAGTCCCGCATCCCAACCGATGTGCTGCTGGACAATCAGAGCAGCCAGGGGAGCACAGAACAGCAGCAGCAGCAGCAGCAGACCTGCA] [+] EMBL BU808059 [CTCCAGACACCGACCGTCTTCAGACCCTGACACAGCACCTCGGCTCCCGGAGCGAGTGCATCGACGCAGAGAGACCGAACCGATTCGGATTTACCCTC AACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGGAGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAAGAACCTGGCCAGTCCTGAACAGCTGGAGAAGTTCCAGTCCCGCATCCCAACCGATGTGCTGCTGGACAATCAGAGCAGCCAGGGGAGCACAGAACAGCAGCAGCAGCAGCAGCAG ] [+] EMBL CA591684 [ CTTGACACCGACCGTCTTCAGACCCTGACACAGCACCTCGGCTCCCGGAGCGAGTGCATCGACGCAGAGAGACCGAACCGATTCGGATTTACCCTC AACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGGAGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAAGAACCTGGCCAGTCCTGAACAGCTGGAGAAGTTCCAGTCCCGCATCCCAACCGATGTGCTGCTGGACAATCAGAGCAGCCAGGGGAGCACAGAACAGCAGCAGCAGCAGCAGCAGACCTGCA] [+] EMBL FR0059478 [ GAGAGGCCGATTCGATTCGGATTTACCCTC ACCTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACTAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCTGGCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATTCTCCAGGAGCAGATCAAAGAGCTGGCG ] [+] EMBL FR0060702 [ TCGGATTTACCCTCGGGCGTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGGGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAA ] [+] EMBL FR0059463 [ CCCGTCGCAGGGGTGGCGAGAACTTTAATCCAAGCCCGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGCTAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCAATGGATCTCGTCAAGAACCACTTGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGGAGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAA AACCTTGGCAGGCCTGAACAGTTGGAGA ] consensusID : consensus_2529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 360 fasta sequence [GAGTGCATTTTACGCAGAGAGACCGAACCGATGGGGAGGTTACCCTCAACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTGTCTCCTCGGAGGGGACGAGGTTTCGGTCAAACTTGACAACAGGTAAACATCCGTTGTGGATCGAGCTTTCGGAACGTTTGGGTGGGCGTGCGGGGCGCTCCATTGTTCACACACGCACACACACACACACACACACACGGCACACACACACACACACAGCGCTACAC] [+] EMBL FR0059604 [GAGTGCATTTTACGCAGAGAGACCGAACCGATGGGGAGGTTACCCTCAACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTGTCTCCTCGGAGGGGACGAGGTTTCGGTCAAACTTGACAACAGGTAAACATCCGTTGTGGATCGAGCTTTCGGAACGTTTGGGTTGGCGTGCCGGGCt ] [+] EMBL FR0059662 [ CAGAGAGACCGAACCGATTCGGA TTTACCCTCAACTGTTAACAACCCGTCGCAAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTTCGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTTCTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGGTAAACATCCGTTGTGGATCGAGCTTTCGGAACGTTTGGGTGTGCGTGCGGGCTGCTCCATTGTTCACACACGCACACACACACACACACACACACGGCACACACACACACACACAGCGCTACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2529#0 CTCCAGACACCGACCGTCTTCAGACCCTGACACAGCACCTCGGCTCCCGGAGCGAGTGCA 60 consensus_2529#1 -----------------------------------------------------GAGTGCA 7 ******* consensus_2529#0 TCG-ACGCAGAGAGACCGAACCGATTCGGAT-TTACCCTCAACTGTTAACAACCCGTCGC 118 consensus_2529#1 TTTTACGCAGAGAGACCGAACCGATGGGGAGGTTACCCTCAACTGTTAACAACCCGTCGC 67 * ********************* *** **************************** consensus_2529#0 AAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTT 178 consensus_2529#1 AAACGTGGCGAGAACTTTAATCCAAGCGAGCTTGACGTTCGACATGAGCACAGAGATGTT 127 ************************************************************ consensus_2529#0 CGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTT 238 consensus_2529#1 CGCCAAAACACCCATGGAAGTGGCCGTCTACCAGTTGCATAACTTCTCCATCTCTTTCTT 187 ************************************************************ consensus_2529#0 CTCGTCTCTCCTCGGAGGGGACGTGGTTTCGGTCAAACTTGACAACAGCGCCTCTGGTGC 298 consensus_2529#1 CTCGTGTCTCCTCGGAGGGGACGAGGTTTCGGTCAAACTTGACAACAG-GTAAACATCCG 246 ***** ***************** ************************ * consensus_2529#0 TAGCGTGGTGGCCATTGACAACAAGATTGAACAGGCA-ATGGATCTCGTCAAGAACCACT 357 consensus_2529#1 TTGTGGATCGAGCTTTCGGAAC--GTTTGGGTGGGCGTGCGGGGCGCTCCATTGTTCACA 304 * * * * * ** *** * *** *** ** * * ** *** consensus_2529#0 TGATGTACGCCGTGCGCGAGGAGGTGGAGATCCTCAAGGAGCAGATCAAAGAGCTGGCGG 417 consensus_2529#1 C-ACGCACAC-ACACACACACACACACACGGCACACACACACACA-CACAGCGCTACAC- 360 * * ** * * * * * * * ** * ** ** *** consensus_2529#0 AGAAGAACAACCAGCTGGAGAGGGAGAACTACCTTCTGAAGAACCTGGCCAGTCCTGAAC 477 consensus_2529#1 ------------------------------------------------------------ consensus_2529#0 AGCTGGAGAAGTTCCAGTCCCGCATCCCAACCGATGTGCTGCTGGACAATCAGAGCAGCC 537 consensus_2529#1 ------------------------------------------------------------ consensus_2529#0 AGGGGAGCACAGAACAGCAGCAGCAGCAGCAGCAGACCTGCA 579 consensus_2529#1 ------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |