These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 589 fasta sequence [AGAAGTCTTTGGAACAGTTTTATTGCTCTGTTGGACGACTTTTGACAACAACGGCATTTTCGTCCAAAGTTCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGGATAAGAATTGCATTAATTGTCAGTAAACACCCGAAAATCCGTTTTTCCCTGAAGCTAGAATGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTCAGTCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGTGGGCGAGGGACAGTCAGGGATCACTCCCTCGGCGTGCTACTACACAAGGATGAGAAACTAACCGTGACACAGGCCACTCCGGTGAGCGGGAGCGCCTCTTTTCTCCGCTTCCACTACCAGCTGAGCGAGAGCCGCTCGACCTTCTGGGAAACGGTCCTATCAAAAGATAGCCTCTTCCTGGAGATCCCTGCCGGGACGCTGGCAGAGGGGAGCAAGGAGGGGCTGACCGCTCTGCTTGGGTTTGCAGAAGAAAAGCTCAAAGTTAACCATGTGTTCCTATGGTTCCATAAA] [+] EMBL BU808202 [AGAAGTCTTTGGAACAGTTTTATTGCTCTGTTGGACGACTTTTGACAACAACGGCATTTTCGTCCAAAGTTCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGGATAAGAATTGCATTAATTGTCAGTAAACACCCGAAAATCCGTTTTTCCCTGAAGCTAGAATGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTCAGTCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGTGGGCGAGGGACAGTCAGGGATCACTCCCTCGGCGTGCTACTACACAAGGATGAGAAACTAACCGTGACACAGGCCACTCCGGTGAGCGGGAGCGCCTCTTTTCTCCGCTTCCACTACCAGCTGAGCGAGAGCCGCTCGACCTTCTGGGAAACGGTCCTATCAAAAGATAGCCTCTTCCTGGAGATCCCTGCCGGGACGCTGGCAGAGGGGAGCAAGGAGGGGCTGACCGCTCTGCTTGGGTTTGCAGAAGAAAAGCTCAAAGTTAACCATGTGTTCCTATGGTTCCATAAA] [+] EMBL BU805906 [ AAGTCTTTGGAACAGTTTTATTGCTCTGTTGGACGACTTTTGACAACAACGGCATTTTCGTCCAAAGTTCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGGATAAGAATTGCATTAATTGTCAGTAAACACCCGAAAATCCGTTTTTCCCTGAAGCTAGAATGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTCAGTCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGTGGGCGAGGGACAGTCAGGGATCACTCCCTCGGCGTGCTACTACACAAGGATGAGAAACTAACCGTGACACAGGCCACTCCGGTGAGCGGGAGCGCCTCTTTTCTCCGCTTCCACTACCAGCTGAGCGAGAGCCGCTCGACCTTCTGGGAAACGGTCCTATCAAAAGATAGCCTCTTCCTGGAGATCCCTGCCGGGACGCTGGCAGAGGGGAGCAAGGAGGGGCTGACCGCTCTGCTTGGGTTTGCAGAAGAAAAGCTCAAAGTTAACCATGTGTTCCTATGGTTCCATAAA] [+] EMBL FR0061554 [ TTGACAACAACGGCATTTTCGTTCAAAGTTCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGCATAAGAATTGCATTAATTGTCAGTAAACACCCGAAAATCCGTTTTTCCCTGAAGCTAGAATGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTCAGTCTCCAGGGCCTCTGTGGCGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGTGGGCGAGGGACAGTCAGGGATCACTCCCTCGGCGGGCTACTACACAAGGATGAG ] consensusID : consensus_2533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 508 fasta sequence [AGAGCAAAGAGAAGTCCGTCCGTCGTGTCTCTACCCGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAACAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAACAGCAGTACTATACTAACATGGCGGATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCCGAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGGCACAAGGGATCACGTGTCTACAGCTCAGCTTCTCTTTTCGGATCGAAAGTTGACTGTAACAGAAGAACCTGCAGGGAATGGTCGCCCAGGGATACTCCGCTTTCAAAGCCGGCCCACCACGACAAAAACCATCCAGTGGGACGCTGTCCTAAGGAGCAACGCACTTTTTTGTGGAGATGCCTCGTGTCCTGCTTCCTGAAGACAGTAAAGAGAGTTTCGCTGCTCTCTTGGAGTATGCT] [+] EMBL BU806408 [AGAGCAAAGAGAAGTCCGTCCGTCGTGTCTCTACCCGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAACAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAACAGCAGTACTATACTAACATGGCGGATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCCGAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGGCACAAGGGATCACGTGTCTACAGCTCAGCTTCTCTTTTCGGATCGAAAGTTGACTGTAACAGAAGAACCTGCAGGGAATGGTCGCCCAGGGATACTCCGCTTTCAAAGCCGTCCCACCACGACAAAAACCATCCAGTGGGACGCTGTCCTAAGGAGCAACGCAC TTTTTGTGGAGATGCCTCGTGTCCTGCTTCCTGAAGACAGTAAAGAGAGTTTCGCTGCTCTCTTGGAGTATGCT] [+] EMBL CA590188 [ GAGAAGTCCGTCCGTCGTGTCTCTACCCGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAACAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAACAGCAGTACTATACTAACATGGCGGATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCCGAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGG ] [+] EMBL FR0061355 [ CGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAACAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAACAGCAGTACTATACTAACATGGCGGATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCCGAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGGCACAAGGGATCACGTGTCTACAGCTCAGCTTCTCTTTTCGGATCGAAAGTTGACTGTAACAGAAGAACCTGCAGGGAATGGTCGCCCAGGGATACTCCGCTTTCAAAGCCTGCCCACCACGACAAAAACCATCCAGTGGGACGCTGTCCTAAGGAGCAACGCACTTTTTTGTGGAGATGCCTCGTGTCCTGCTTCCT ] consensusID : consensus_2533#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [CTACAGACGATTTTGAATAGTCATTGTTTTGTCAGAGAAAAAGAGAGAAACTTAGCCGCCATGCCCGTGATCGAGCAGTCCAGTAATAAACCCGAATGTGAAAGTCCCAGTAGGTGCGCCCGCTGTTGCAGTAACCCGTGTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCTCCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGATCAACGGGATCGCAATCTTTCAGCTAAGCTATTCTATTCTGATTCTCAGTTGCTGGGTCTCGAGGAGCCGCCTCCGGGTAATGGCAGAGTGCGGTTCTTGCACTTTGAGCCCCGTCGCTCCGAGTGGAAGATCTGCAC] [+] EMBL FR0056801 [CTACAGACGATTTTGAATAGTCATTGTTTTGTCAGAGAAAAAGAGAGAAACTTAGCCGCCATGCCCGTGATCGAGCAGTCCAGTAATAAACCCGAATGTGAAAGTCCCAGTAGGTGCGCCCGCTGTTGCAGTAACCCGTGTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCTCCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGATCAACGGGATCGCAATCTTTCAGCTAAGCTATTCTATTCTGATTCTCAGTTGCTGGGTCTCGAGGAGCCGCCTCCGGGTAATGGCAGAGTGCGGTTCTTGCACTTTGAGCCCCGTCGCTCCGAGTGGAAGATCTGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2533#1 --------------------------------------------AGAGCAAAGAGAAGTC 16 consensus_2533#2 ------------------------------------------------------------ consensus_2533#0 AGAAGTCTTTGGAACAGTTTTATTGCTCTGTTGGACGACTTTTGACAACAACGGCATTTT 60 consensus_2533#1 CGTCCGTCGTGTCTCTACCCGAGGCCGGATGGTAAAATCCAACCTCCAGCGGATACTAAA 76 consensus_2533#2 -------------------------------------------CTACAGACGATTTTGAA 17 consensus_2533#0 CGTCCAAAGT-TCTGTCTCCGTTCACGGATGGTGACGTTCCGTGTTGAGTTTTTGCTGGA 119 * ** * * * consensus_2533#1 CAGTCATTGTTTCGCTCGTGAAAAAGAAGGAAAAC-AGCAGTACTATACTAACATGGCGG 135 consensus_2533#2 TAGTCATTGTTTTGTCAGAGAAAAAGAGAGAAACTTAGCCGCCATGC-CCGTGATCGAGC 76 consensus_2533#0 TAAGAATTGCATTAATTGTCAGTAAACACCCGAAA-ATCCGTTTTTCCCTGAAGCTAGAA 178 * **** * * * ** * * * * * * consensus_2533#1 ATTTGAGCAGTAGTATCTGTGACATGATTGGAAATCTGTCCTTGCACTGTACTAGTACCC 195 consensus_2533#2 AGTCCAGTAATAAACCCGAATGTGAAAGTCCCAGTAGGTGCGCCCGCTGTTGCAGTAACC 136 consensus_2533#0 TGTTGAACACCGGGAAAAGCTCCTGGTTAGCGGGGTCTCGGGTGTCCAGCTCCATCCCTC 238 * * * * * * * consensus_2533#1 GAGGCCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGT 255 consensus_2533#2 CGTGTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCTCCCACCCCTGAAGATCCCAGGT 196 consensus_2533#0 AGTCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACAACTGAAGATCCCGGGT 298 ******************************** ***** *********** *** consensus_2533#1 GGGCGAGGGAATGGCACAAGGGATCACGTGTCTACAGCTCAGCTTCTCTTTTCGGATCGA 315 consensus_2533#2 GGGCGAGGGAATGATCAACGGGATCGCAATCTTTCAGCTAAGCTATTCTATTCTGATTCT 256 consensus_2533#0 GGGCGAGGGA-CAGTCA--GGGATCAC--TCCCTCGGC-GTGCTACTACACAAGGATGAG 352 ********** ****** * * ** *** * *** consensus_2533#1 AAGTTGACTGTAACAGAAGAACC---TGCAGGGAATGGTCGCCCAGGGATACTCCGCTTT 372 consensus_2533#2 CAGTTGCTGGGTCTCGAGGAGCCGCCTCCGGGTAATGGCAGAGTGCGGTTCTTGCACTTT 316 consensus_2533#0 AAACTAACCGTGACACAGGCCAC---TCCGGTGAGCGGGAGCGCCTCTTTTCTCCGCTTC 409 * * * * * * * * * * ** * * * * *** consensus_2533#1 CAAAGCCGGCCCACCACGACAAAAACCATCCAGTGGGACGCTGTCCTAAGGAGCAACGCA 432 consensus_2533#2 GAGCCCCGTCGCTCCGAGTGGAAGATC-TGCAC--------------------------- 348 consensus_2533#0 CACTACCAGCTGAGCGAGAGCCGCTCGACCTTCTGGGAAACGGTCCTATCAAAAGATA-G 468 * ** * * * consensus_2533#1 CTTTTTTGTGGAGATGCCTCGTGTCCTGCTTCCTGAAGACAGTAAAGAGAGTTTCGCTGC 492 consensus_2533#2 ------------------------------------------------------------ consensus_2533#0 CCTCTTCCTGGAGATCCCTGCCGGGACGCTGGCAGAGGGGAGCAAGGAGGGGCTGACCGC 528 consensus_2533#1 TCTCTTGGAGTATGCT-------------------------------------------- 508 consensus_2533#2 ------------------------------------------------------------ consensus_2533#0 TCTGCTTGGGTTTGCAGAAGAAAAGCTCAAAGTTAACCATGTGTTCCTATGGTTCCATAA 588 consensus_2533#1 - consensus_2533#2 - consensus_2533#0 A 589 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |