These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 599 fasta sequence [ACGTTGTGAGGTCATCTTGTTCCATCTCCTCCTTTTAAGCCAGCGTTTGGGAGAGGGAGGGCCCCGGGAATTATATACCCTCTGTGAAGCATTTGCACATCTGCATTAGAAGGCAGCAGGGCTCCGACAGCAGGACACTGACTCACGCAGGAGTCGGCATGGCGGACAAAGGTCCGTCCTACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATGTGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTTAAACAAATGGAGCAGATCTCCCAGCTTCTGAAGGGAGGCGAAGCATACGGAGCCAACAAGACCGACATGGTCCAGACCGCGGATCTTCTGGACGACGACGAAACTGGCCCGCGGCCAAAGACCCCGTCTGCCCTAGGTGCGGGTGGGCCTAACCCACGGACCACCCCCCTCATCCGGCCGCAC] [+] EMBL CA333159 [ACGTTGTGAGGTCATCTTGTTCCATCTCCTCCTTTTAAGCCAGCGTTTGGGAGAGGGAGGGCCCCGGGAATTATATACCCTCTGTGAAGCATTTGCACATCTGCATTAGAAGGCAGCAGGGCTCCGACAGCAGGACACTGACTCACGCAGGAGTCGGCATGGCAAACAAAGGTCCGTCCTACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATGTGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCCTTCAACAAATGGAGCAGATCTCCCAGCTTCTGAAGGGAGGCTCAGCATACGGAGCCCACCAGACCGACCTGGTTCCGACCCCGGATCTTCTGGACGACGACGAAACTGGCCCGCGGCCAAAGACCCCGTCTGCCCTAGGTGCGGGTGGGCCTAACCCACGGACCACCCCCCTCATCCGGCCGCAC] [+] EMBL FR0060484 [ CGCAGGAGTCGGCATGGCGGACAAAGGTCCGTCCTACGGCCTGAGCCGGCAGGTTCAGGATAAGGTCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATGTGGTACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTTAAACAAATGGAGCAGATCTCCCAGTTTCTGAAGGGAGCTGAAGCATACGGAGTCAACAAGACCGACATGTTCCAGACCGTGGATCT ] [+] EMBL CA332890 [ CCTACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCTGATGTGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGC ] [+] EMBL FR0060057 [ CTGAGCCGGCAGGGGGAGGATAAGATCGACAGCAAGTACGACCCATAACTGGAGCAGATTCTGGTGGGGTGGATCAGCCGTCAGTGTGGCGCCGATGTGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTCAAACAAATGGAGCAGATCTCCCAG ] consensusID : consensus_2536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence [ACAGTCTGAGCAGCAGGACAAGTTAGCATTCATAGGGCCAACCAGAGGAATCACGTGGGTGTGACCGTTAACCATCTGAACCCTCCTCAGGAACAGGAAGTTGAGGTGACCTAACTTCAAGATGGCAGCAAAGGGAGTCGGCATGGCAAACAAAGGGCCGTCCTACGGGCTGAGCCGGGAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGGCAGGGTGGCGGCGATGTTGGGACGGCCAGAACCTGGGAAATTAGGGTTCCAGGCCTGGGTGAGGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTCAAACAAATGGAGCAGATCTCCCAGTTTCTGAAGGGAGCTGAAGCATACGGAGTCAACAAGACCGACATGTTCCAGACCGTGGATCTTTGGGAAGCTAAGGACCTGGCCGCGGTGCAGAGGACCCTGTCGGCCCTGGGGAGCTTGGCTGTCACCAAGGACGAAGGCACGTAT] [+] EMBL BU807522 [ACAGTCTGAGCAGCAGGACAAGTTAGCATTCATAGGGCCAACCAGAGGAATCACAT CCTGTGACCGTTAACCATCTGAACCCTCCTCAGGAACAGGAAGTTGAGGTGACCTAACTTCAAGATGGCAGCAAAGGGAGTCGGCATGGCAAACAAAGGTCCGTCCTACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCTGAACTGGAGCAGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATG TGGGACGGCCAGAACCTGGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAACAGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTCAAACAAATGGAGCAGATCTCCCAGTTTCTGAAGGGAGCTGAAGCATACGGAGTCAACAAGACCGACATGTTCCAGACCGTGGATCTTTGGGAAGCTAAGGACCTGGCCGCGGTGCAGAGGACCCTGTCGGCCCTGGGGAGCTTGGCTGTCACCAAGGACGAAGGCACGTAT] [+] EMBL FR0060550 [ ATTCATAGGGCCAACCAGAGGAATCACGTGGGTGTGACCGTTAACCATCTGAACCCTCCTCAGGAACAGGAAGTTGAGGTGACCTAACTTCAAGATGGCAGCAAAGGTAGTCGGCATGGCAAACAAAGGGCCGTCCTACGGGCTGAGCCGGGATGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGTGCAGATTCTGGTGGAGTGGATCAGCCGGCAGGGTGGCGGCCATGTTGGGCTGGCCAGAACCTGGGAAATTAGGGTTCCAGGCCTGGGTGAGGGAT ] consensusID : consensus_2536#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [GAGCAGAGGACCCTGTCGGCCCTGGGGAGCTTGGCTGTCACCAAGGACGAAGCACGTATCAAGGGTACCCCAACTGGTTTTTCAAAAAAGCCCAGGAGAACAAGCGGGAGTTCAGCGACGAGCAGCTGAAGGCCGGCAAGAACGTGATCGGCCTGCAGATGGTCTCCAACAAAGGAGCCAGCCAGGAGGGCATGAGCTACGGAAGACCCCGGCAGATCATGTAGAACGGCTGCACCCCAACTCCCACAACTTAACCCCCTCCTAGAGGCTTTCAGCAGCTAACTGACGCAATAACCCGCTTTGATCCTTTGGTTTGGTTTAAATGGACAACC] [+] EMBL FR0062769 [GAGCAGAGGACCCTGTCGGCCCTGGGGAGCTTGGCTGTCACCAAGGACGAAGCACGTATCAAGGGTACCCCAACTGGTTTTTCAAAAAAGCCCAGGAGAACAAGCGGGAGTTCAGCGACGAGCAGCTGAAGGCCGGCAAGAACGTGATCGGCCTGCAGATGGTCTCCAACAAAGGAGCCAGCCAGGAGGGCATGAGCTACGGAAGACCCCGGCAGATCATGTAGAACGGCTGCACCCCAACTCCCACAACTTAACCCCCTCCTAGAGGCTTTCAGCAGCTAACTGACGCAATAACCCGCTTTGATCCTTTGGTTTGGTTTAAATGGACAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2536#0 ACGTTGTGAGGTCATCTTGTTCCATCTCCTCCTTTTAAGCCAGCGTTTGGGAGAGGGAGG 60 consensus_2536#1 ACAGTCTGAG--CAGCAGGACAAGTTAGCATTCATAGGGCCAACCAGAGGAATCACGTGG 58 consensus_2536#2 ------------------------------------------------------------ consensus_2536#0 GCCCCGGGAATTATATACCCTCTGTGAAGCATTTGCACATCTGCATTAGAAGGCAGCAGG 120 consensus_2536#1 GT----GTGACCGTTAACCATCT--GAACCCTCC-----TCAGGAACAGGAAGTTGAGGT 107 consensus_2536#2 ------------------------------------------------------------ consensus_2536#0 GCTCCGACAGCAGGACACTGACTCACGCAGGAGTCGGCATGGCGGACAAAGGTCCGTCCT 180 consensus_2536#1 GACCTAACTTCAAGATGGCAGCAAA---GGGAGTCGGCATGGCAAACAAAGGGCCGTCCT 164 consensus_2536#2 -------------------------------------------GAGCAGAGGACCCTGTC 17 ** *** ** * consensus_2536#0 ACGGCCTGAGCCGGCAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGC 240 consensus_2536#1 ACGGGCTGAGCCGGGAGGTTCAGGATAAGATCGACAGCAAGTACGACCCAGAACTGGAGC 224 consensus_2536#2 G-GCCCTGGGGAGCTTGGCTGTCACCAAGGACGA-AGCACGTATCAAG-GGTACCCCAAC 74 * *** * * ** * *** *** **** *** * * ** * * consensus_2536#0 AGATTCTGGTGGAGTGGATCAGCCGTCAGTGTGGCGCCGATGT-GGGACGGCCAGAACCT 299 consensus_2536#1 AGATTCTGGTGGAGTGGATCAGCCGGCAGGGTGGCGGCGATGTTGGGACGGCCAGAACCT 284 consensus_2536#2 TGGTTTTTCAAAAAAGCCCAGGAGAACAAGCGGGAGTTCAGCGACGAGCAGCTGAAGGCC 134 * ** * * * * ** ** * * * * ** * * consensus_2536#0 GGTAAATTAGGGTTCCAGGCCTGGCTGAAGGATGGATGCATTCTGTGCCAGCTGGTGAAC 359 consensus_2536#1 GGGAAATTAGGGTTCCAGGCCTGGGTGAGGGATGGATGCATTCTGTGCCAGCTGGTGAAC 344 consensus_2536#2 GGCAAG--AACGTGATCGGCCTGC-----AGATGGTCTCCAACAAAGG-AGCCAGCCAGG 186 ** ** * ** ****** ***** * * * *** * * consensus_2536#0 AGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTTAAA 419 consensus_2536#1 AGCCTGTTTGTTGGGGACAAGCCCGTGAAGAAGATCCAAAACTCAACCATGGCCTTCAAA 404 consensus_2536#2 AGGGCATGAGCTACGGAAGACCCCG-GCAGATCATGTAGAAC--GGCTGCACCC------ 237 ** * * * *** * **** * *** ** * *** * ** consensus_2536#0 CAAATGGAGCAGATCTCCCAGCTTCTGAAGGGAGGCGA-AGCATACGGAGCCAACAAGAC 478 consensus_2536#1 CAAATGGAGCAGATCTCCCAGTTTCTGAAGGGAGCTGA-AGCATACGGAGTCAACAAGAC 463 consensus_2536#2 CAACTCCCACAACTTAACCCCCTCCTAGAGGCTTTCAGCAGCTAACTGACGCAATAAC-C 296 *** * ** * ** * ** *** *** ** ** *** ** * consensus_2536#0 CGACATGGTCCAG-ACCGCGGATCTTCTGGACGACGACGAAACTGGCC-CGCGGCCAAAG 536 consensus_2536#1 CGACATGTTCCAG-ACCGTGGATCTT-TGGGAAGCTAAGGACCTGGCCGCGGTGCAGAGG 521 consensus_2536#2 CGCTTTGATCCTTTGGTTTGGTTTAAATGGACAACC------------------------ 332 ** ** *** ** * *** * consensus_2536#0 ACCCCGTCTGCCCTAGGTGCGGGTGGGCCTAACCCACGGACCACCCCCCTCATCCGGCCG 596 consensus_2536#1 ACCCTGTCGGCCCTGGGG--AGCTTGGCTGTCACCAAGGACGAAGGCACGTAT------- 572 consensus_2536#2 ------------------------------------------------------------ consensus_2536#0 CAC 599 consensus_2536#1 --- consensus_2536#2 --- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |