These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 661 fasta sequence [GGGGTGGGTAGATTAGGTGCCGACACTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC-TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC-GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGTGATTGGGGGAGGATCTGGAGGTCTTGCTTGCTCAAAGGAAGCGGCTCTATTGGGAAAGAAGGTCATGGTCCTGGACTATGTCGTGCCCACACCCAAAGGAACGTCCTGGGGTCTTGGTGGAA] [+] EMBL CA590362 [GGGGTGGGTAGATTAGGTGCCGACACTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTC ] [+] EMBL CA590789 [GGGGTGGGTAGATTAGGTGCCGACACTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCCTTTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTACATCTGATAAGGGATGGAGCCGGGTACGAGGGGAGGTTGGTCGGAGATG CTGGG ] [+] EMBL BU808173 [ CTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGTGATTGGGGGAGGATCTGGAGGTCTTGCTTGCTCAAAGGAAGCGGCTCTATTGGGAAAGAAGGTCATGGTCCTGGACTATGTCGTGCCCACACCCAAAGGAACGTCCTGGGGTCTTGGTGGAA] [+] EMBL BU808114 [ AGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGTGATTGGGGGAGGATCTGGAGGTCTTGCTTGCTCAAAGGAAGCGGCTCTATTGGGAAAGAAGGTCATGGTCCTGGACTATGTCGTGCCCACACCCAAAGGAACGTCCTGGGGTCTT ] [+] EMBL CA591396 [ AAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTC ] [+] EMBL FR0058763 [ GGCTTTTACCCC TTCTAA GGGCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGGGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGTGATTGGGGG ] consensusID : consensus_2538#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [TTTCTTTTGCATGCAGATTTGATGTGAATTATTCATGGCACCAATGTCTGTGTGTTGTCAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGNGGGGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCCTAAATGTCTTCATCAACAAGACCCACGGCGGTGGTTGTGACAAAAACCCTTG] [+] EMBL FR0058947 [TTTCTTTTGCATGCAGATTTGATGTGAATTATTCATGGCACCAATGTCTGTGTGTTGTCAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGNGGGGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCCTAAATGTCTTCATCAACAAGACCCACGGCGGTGGTTGTGACAAAAACCCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2538#0 GGGGTGGGTAGATTAGGTGCCGACACTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTT 60 consensus_2538#1 ------------------------------------------------------------ consensus_2538#0 CTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTAC 120 consensus_2538#1 ------------------------------------------------------------ consensus_2538#0 CCCTTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAA 180 consensus_2538#1 ------------------------------------------------------------ consensus_2538#0 ATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTT 240 consensus_2538#1 ------------------------------------------------------TTTCTT 6 *** consensus_2538#0 ATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTC 300 consensus_2538#1 TTGCATGCAGATTTGATGTGAATTATTCATGGCA-CCAATGTCTGTGTGTTGTCA-GGTC 64 * * * * ** ** * * * * * **** * ** * **** consensus_2538#0 AAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAG 360 consensus_2538#1 AAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGNGGGGTTGGATCTGATAGAG 124 **************************************** ** **************** consensus_2538#0 GATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCCTAA- 419 consensus_2538#1 GATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCCTAAA 184 *********************************************************** consensus_2538#0 TGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGA 479 consensus_2538#1 TGTCTTCATCAACAAGACCCACGGCGGTGGTTGTGACAAAAACCCTTG------------ 232 *********************** ****** ********** ** consensus_2538#0 CGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGT 539 consensus_2538#1 ------------------------------------------------------------ consensus_2538#0 GATTGGGGGAGGATCTGGAGGTCTTGCTTGCTCAAAGGAAGCGGCTCTATTGGGAAAGAA 599 consensus_2538#1 ------------------------------------------------------------ consensus_2538#0 GGTCATGGTCCTGGACTATGTCGTGCCCACACCCAAAGGAACGTCCTGGGGTCTTGGTGG 659 consensus_2538#1 ------------------------------------------------------------ consensus_2538#0 AA 661 consensus_2538#1 -- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |