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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 561 fasta sequence
[TCATCTTGTTGTTCTTTTACTGGTGTCTGTTGCTGAACAAGAACAGCCATCATGCCGACTGATGCCCAAAGTGACGCTCGCTCCTTCCTGACGGAGGAGATGATCGCAGAATTTAAAGCTGCCTTCGACATGTTTGACACTGACGGTGGTGGTGATATCAGCACCAAGGAGTTGGGAACTGTGATGCGAATGCTCGGCCAGAACCCGTCAAGGGAGGAGCTGGACGCCATCATTGAAGAAGTCGATGAGGATGGCAGCGGTACCATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAACAGTTAAAGGAAGATCAGGCTGGAAAGAGTGAAGACGAACTTTCTGAGTGCTTCCGAATTTTTGACAAGAATGGAGATGGTTTCGTTGACAGGGAGGAGTTTGGTGCAATCCTCCATCTGACAGGAGAGCAAGTCACTGAAGAAGATATCGATGAAATGTTTGGGGAATCAGACACAAACAAAGATGGAAAGATTGATTTTGATGAGTTTTTGAAAATGATGGGAAATGTCCAGTGATGAGATTCTACATTCCGCTACACA]
[+] EMBL CA588416 [TCATCTTGTTGTTCTTTTACTGGTGTCTGTTGCTGAAC CCTTCAGCCATCATGCCGACTGATGCCCAAAGTGACGCTCGCTCCTTCCTGACGGAGGAGATGATCGCAGAATTTAAAGCTGCCTTCGACATGTTTGACACTGACGGTGGTGGTGATATCAGCACCAAGGAGTTGGGAACTGTGATGCGAATGCTCGGCCAGAACCCGTCAAGGGAGGAGCTGGACGCCATCATTGAAGAAGTCGATGAGGATGGCAGCGGTACCATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAACAGTTAAAGGAAGATCAGGCTGGAAAGAGTGAAGACGAACTTTCTGAGTGCTTCCGAATTTTTGACAAGAATGGAGATGGTTTCGTTGACAGGGAGGAGTTTGGTGCAATCCTCCATCTGACAGGAGAGCAAGTCACTGAAGAAGATATCGATGAAATGTTTGGGGAATCAGACACAAACAAAGATGGAAAGATTGATTTTGATGAGTGTTTGAAAATG ]
[+] EMBL FR0055777 [ TTGTTCTTTTACTGGTGTCTGTTGCTGAACAAGAACAGCCATCATGCCGACTGATGCCCAAAGTGACGCTCGCTCCTTCCTGACGGATGACATGATCGCAGAATTTAAAGCTGCCTTCGACATGTTTGACACTGACGGTGGTGGTGATATCAGCACCAAGGAGTTGGGAACTGTGATGCGAATGCTCGGTCAGAACCCGTCAAGGGAGGAGCTGGACGCCATCATTGATGAAGTCGATGAGGATGGTAGTGGTACCATTGACTTTGAGGAGGTCTTGGGCATGATGGGGCAACAGTTAATGGAAAATCATGCTGGGAAGAGTGAAGACGATCTTTCTGAGTGGTTCCGAATTTTTGACAATCATGGGGATGGGTTCGTTGACAGGGAG ]
[+] EMBL FR0055205 [ TTTACTGGTGTCTGTTGCTGAACAAGAACAGCCATCATGCCGACTGATGCCCAAAGTGACGCTCGCTCCTTCCTGACGGAGGAGATGATCGCAGAATTTAAAGCTGCCTTCGACATGTTTGACACTGACGGTGGTGGTGATATCAGCACCAAGGAGTTGGGAACTGTGATGCGAATGCTCGGCCAGAACCCGTCAAGGGAGGAGCTGGACGCCATCATTGAAGAAGTCGATGAGGATGGCAGCGGTACCATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAACAGTTAAAGGAAGATCAGGCTGGAAAGAGCGAAGACGAACTTTCTGAGTGCTTCCGAATTTTTGACAAGAATGGAGATGGTTTCGTTGACAGGGAGGAGTTTGGTGCAATCCTCCATCTGACAGGAGAGCACGTCACTGAAGAAGATATCGATGAAATGTTTGGTGAATCAGCCACAGACAAAGATGGAAAGATTGACTTTGATGAGTTTTTGAAA ]
[+] EMBL CA591371 [ TACTGGTGTCTGTTGCTGAACAAGAACAGCCATCATGCCGACTGATGCCCAAAGTGACGCTCGCTCCTTCCTGACGGAGGAGATGATCGCAGAATTTAAAGCTGCCTTCGACATGTTTGACACTGACGGTGGTGGTGATATCAGCACCAAGGAGTTGGGAACTGTGATGCGAATGCTCGGCCAGAACCCGTCAAGGGAGGAGCTGGACGCCATCATTGAAGAAGTCGATGAGGATGGCAGCGGTACCATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAACAGTTAAAGGAAGATCAGGCTGGAAAGAGTGAAGACGAACTTTCTGAGTGCTTCCGAATTTTTGACAAGAATGGAGATGGTTTCGTTGACAGGGAGGAGTTTGGTGCAATCCTCCATCTGACAGGAGAGCAAGTCACTGAAGAAGATATCGATGAAATGTTTGGGGAATCAGACACAAACAAAGATGGAAAGATTGATTTTGATGAGTTTTTGAAAATGATGGAAAATGTCCAGTGATGAGATTCTACATTCCGCTACACA]
[+] EMBL FR0055748 [ AAGAACAGCCATCATGCCGACTGATGCCCAAAGTGACGCTCGCTCCTTCCTGACGGAGGAGATGATCGCAGAATTTAAAGCTGCCTTCGACATGTTTGACACTGACGGTGGTGGTGATATCAGCACCAAGGAGTTGGGAACTGTGATGCGAATGCTCGGCCAGAACCCGTCAAGGGAGGAGCTGGACGCCATCATTGAAGAAGTCGATGAGGATGGCAGCGGTACCATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAACAGTTAAAGGAAGATCAGGCTGGAAAGAGTGAAGACGAACTTTCTGAGTGCTTCCGAATTTTTGACAAGAATGGAGATGGTTTCGTTGACAGGGAGGAGTTTGGTGCAATCCTCCATCTGACAGGAGAGCATGTCACTGAAGAAGATATCGATGAAATGTTTGGGGAATCAGACACANACAAAGATTGGAAGATTGACTTTGATGAGGTTTTGAAAATGATGGGAAATGTCCAGTGATGAGATTCTACA ]
[+] EMBL FR0055390 [ GCCGACTGATGCCCAAAGTGACGCTCGCTCCTTCCTGACGGAGGAGATGATCGCAGAATTTAAAGCTGCCTTCGACATGTTTGACACTGACGGTGGTGGTGATATCAGCACCAAGGAGTTGGGAACTGTGATGCGAATGCTCGGCCAGAACCCGTCAAGGGAGGAGCTGGACGCCATCATTGAAGAAGTCGATGAGGATGGCAGCGGTACCATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAACAGTTAAAGGAAGATCAGGCTGGAAAGAGTGAAGACGAACTTTCTGAGTGCTTCCGAATTTTTGACAGGAATGGGGATGGTTTCGTTGACAGGGAGGAGTTTGGTGCAATCCTCCATCTGACAGGAGAGCACGTCACTGAAGAAGATATCGATGAAATGTTTGGGGAATCAGACACATGCAATGATGGGAAGATTGATTTTGATGAGTTTT ]
consensusID : consensus_2541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[TGATGGAAAATGTCCAGTGATGAGATTCTACATTCCGCTACACATGCCTTCTCCTGATCAACAGTTGAAAGGAAACTCATAAAACTCTTACCAGCCAAAACAATTATGGATATAATGTAAGTCAACAAAATGGTGAGGAGCGAAAAACATCTATTTCAACTTCACTGGACTACTAACCCTGCCAGTACTCCCATGAAACCCCGTGGCTTGGTGAGAAAGTCTATAAATAGCTGTTTCAACCTTTTAAGACGAAGGCACTTTCCCCTGGCTACCTCCTGTAACCAGCCATCCAGCTGTCCCATCTTGGCAGCTGATTATTTGGAAATGCTACACCACTTGATTTCAAGTCATGTTCCTCCCTGTCAAAATGAAATTCTTACCTTGTTCTCTGCTTTCCAAATAAATTTGTTTCACTTCCAAAATAAAAAAAAGAAAAAAGAAATAAAAAAAAAAATTGAATAAA]
[+] EMBL FR0055196 [TGATGGAAAATGTCCAGTGATGAGATTCTACATTCCGCTACACATGCCTTCTCCTGATCAACAGTTGAAAGGAAACTCATAAAACTCTTACCAGCCAAAACAATTATGGATATAATGTAAGTCAACAAAATGGTGAGGAGCGAAAAACATCTATTTCAACTTCACTGGACTACTAACCCTGCCAGTACTCCCATGAAACCCCGTGGCTTGGTGAGAAAGTCTATAAATAGCTGTTTCAACCTTTTAAGACGAAGGCACTTTCCCCTGGCTACCTCCTGTAACCAGCCATCCAGCTGTCCCATCTTGGCAGCTGATTATTTGGAAATGCTACACCACTTGATTTCAAGTCATGTTCCTCCCTGTCAAAATGAAATTCTTACCTTGTTCTCTGCTTTCCAAATAAATTTGTTTCACTTCCAAAATAAAAAAAAGAAAAAAGAAATAAAAAAAAAAATTGAATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2541#0 TCATCTTGTTGTTCTTTTACTGGTGTCTGTTGCTGAACAAGAACAGCCATCATGCCGACT 60
consensus_2541#1 TGATGGAAAATGTCCAGTGATGAGATTCTACATTCCGCTACACATGCCTTC-TCCTGATC 59
* ** ** * ** * * * * * *** ** * * **
consensus_2541#0 GATGCCCAAAGTGACGCTCGCTCC-TTCCTGACGGAGGAGATGATCGCAGAATTTAAAGC 119
consensus_2541#1 AACAGTTGAAAGGAAACTCATAAAACTCTTACCAGCCAAAACAATTATGGATATAATGTA 119
* ** ** *** ** * * * * * ** ** * *
consensus_2541#0 TGCCTTCGACATGTTTGACACTGACGGTGGTGGTGATATCAGCACCAAGGAGTTGGGAAC 179
consensus_2541#1 AGTCAACAAAATGGTGAGGAGCGAAAA--ACATCTATTTCAACTTCACTGGACTACTAAC 177
* * * * *** * * ** ** *** * ** * * ***
consensus_2541#0 TGTGATGCGAATGCTCGGCCAGAACCC----GTCAAGGGAGGAGCTGGACGCCATCATTG 235
consensus_2541#1 CCTG---CCAGTACTCCCATGAAACCCCGTGGCTTGGTGAGAAAGTCTATAA-ATAGCTG 233
** * * * *** ***** * * *** * * * ** **
consensus_2541#0 AAGAAGTCGATGAGGATGGCAGCGGTA-CCATTGACTTTGAGGAGTTCTTGGTCATGATG 294
consensus_2541#1 TTTCAACCTTTTAAGACGAAGGCACTTTCCCCTGGCTACCTCCTGTAACCAGCCATCCAG 293
* * * * ** * ** * ** ** ** ** * *** *
consensus_2541#0 GTGCAACAG-TTAAAGGAAGATCAGGCTGGAAAGAGTGAAGACGAACTTTCTGAGTGCTT 353
consensus_2541#1 CTGTCCCATCTTGGCAGCTGATTATTTGGAAATGCTACACCACTTGATTTCAAGTCATGT 353
** ** ** * *** * * ** * * ** **** *
consensus_2541#0 CCGAATTTTTGACAAGAATGGAGATGGTTTCGTTGACAGGGAGGAGTTTGGTGCAATCCT 413
consensus_2541#1 TCC--TCCCTGTCAAAAT--GAAATTCTTACCTTGTTCTCTGCTTTCCAAATAAATTTGT 409
* * ** *** * ** ** ** * *** * * * *
consensus_2541#0 CCATCTGACAGGAGAGCAAGTCACTGAAGAAGATATCGATGAAATGTTTGGGGAATCAGA 473
consensus_2541#1 TTCACTTCCAAAATAAAAAA--AAGAAAAAAGAAATAAAAAAAAAAATTGAATAAA---- 463
** ** * * ** * ** **** ** * *** *** **
consensus_2541#0 CACAAACAAAGATGGAAAGATTGATTTTGATGAGTTTTTGAAAATGATGGGAAATGTCCA 533
consensus_2541#1 ------------------------------------------------------------
consensus_2541#0 GTGATGAGATTCTACATTCCGCTACACA 561
consensus_2541#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |