These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 713 fasta sequence [ACCATCAGCTGTGGAGAACCTACAATAAGATTCACGATTAGAAGAAACCTTCGTCTGAAATGGTGCAACGACTTGGTGTTGATGCGAAAGTCGTGGAAAACTCTGAGGATCAAGGATTTCGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAACCTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTTCCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGAAGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAAGAAAGCCCCAACGGCACCACTTATTATGAACCTCACCCTGTCACGAATGGAGTAGAGGAGCCCA] [+] EMBL FR0060754 [ACCATCAGCTGTGGAGAACCTACAATAAGATTCACGATTAGAAGAAACCTTCGTCTGAAATGGTGCAACGACTTGGTGTTGATGCGAAAGTCGTGATCGTCCCTTCAGATTTA CTTTCGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTG ] [+] EMBL CA590753 [ GGAAAACTCTGAGGATCAAGGATTTCGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAACCTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTTCCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGAAGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAAGAAAGCCCCAACAGCACCACTTATTATGAACCTCACCCTGTCACGAATGGAGTAGAGGAGCCCA] [+] EMBL CA333189 [ GGAAAACTCTGAGGATCAAGGATTTCGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATAAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAACCTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTTCCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGAAGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAAGAAAGCCCCAACGGCACCACTTATTATGAACCTCACCCTGTCACGAATGGAGTTGAGGAG ] [+] EMBL FR0060375 [ CACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGATGNTCATGCA ] [+] EMBL FR0060822 [ ATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGNAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAACTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGGTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGGTGTGGTGCAAGTCCTTGGAGAGCTGGCCAACAATGGGCAGCCCATGAGGAAGTTCATGCA ] [+] EMBL CA332758 [ AAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAACCTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTTCCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGAAGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAA ] consensusID : consensus_2544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [CAAACAATACATAAAAGATTATTTATGAGAGTTCAAGGCTTTCTACGTAGCTAGGCCATTCATAAGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAACTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGTAGGG] [+] EMBL FR0059185 [CAAACAATACATAAAAGATTATTTATGAGAGTTCAAGGCTTTCTACGTAGCTAGGCCATTCATAAGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAACTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGTAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2544#0 ACCATCAGCTGTGGAGAACCTACAATAAGATTCACGATTAGAAGAAACCTTCGTCTGAAA 60 consensus_2544#1 --------------------------------------------------------CAAA 4 *** consensus_2544#0 TGGTGCAACGACTTGGTGTTGATGCGAAAGTCGTGGAAAACTCTGAGGATCAAGGATTTC 120 consensus_2544#1 CAATACA-TAAAAGATTATTTATGAGAGT-TCAAGGCTTTCTACGTAGCTAGGCCATTCA 62 * ** * * ** *** ** ** ** ** * * * *** consensus_2544#0 ---GCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGT 177 consensus_2544#1 TAAGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGT 122 ********************************************************* consensus_2544#0 AGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCA 237 consensus_2544#1 AGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCA 182 ************************************************************ consensus_2544#0 CAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCT 297 consensus_2544#1 CAGGTTTTATGGAAGGAACTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCT 242 ****************** ***************************************** consensus_2544#0 GGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAA 357 consensus_2544#1 GGCTGAAGCAGTGTATGGGCAGGCGGTAGGG----------------------------- 273 ************************** consensus_2544#0 TGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGT 417 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 GGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAAC 477 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 CTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTT 537 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 CCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGA 597 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 AGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAAGAAAGCCC 657 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 CAACGGCACCACTTATTATGAACCTCACCCTGTCACGAATGGAGTAGAGGAGCCCA 713 consensus_2544#1 -------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |