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Takifugu rubripes
cluster # 2544 cluster # 2544       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2544#0 length = 713 sequences # 6  
 consensus_2544#1 length = 273 sequences # 1  
consensusID : consensus_2544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 713
fasta sequence 
                              [ACCATCAGCTGTGGAGAACCTACAATAAGATTCACGATTAGAAGAAACCTTCGTCTGAAATGGTGCAACGACTTGGTGTTGATGCGAAAGTCGTGGAAAACTCTGAGGATCAAGGATTTCGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAACCTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTTCCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGAAGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAAGAAAGCCCCAACGGCACCACTTATTATGAACCTCACCCTGTCACGAATGGAGTAGAGGAGCCCA]

[+] EMBL FR0060754            [ACCATCAGCTGTGGAGAACCTACAATAAGATTCACGATTAGAAGAAACCTTCGTCTGAAATGGTGCAACGACTTGGTGTTGATGCGAAAGTCGTGATCGTCCCTTCAGATTTA  CTTTCGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTG                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA590753             [                                                                                              GGAAAACTCTGAGGATCAAGGATTTCGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAACCTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTTCCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGAAGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAAGAAAGCCCCAACAGCACCACTTATTATGAACCTCACCCTGTCACGAATGGAGTAGAGGAGCCCA]
[+] EMBL CA333189             [                                                                                              GGAAAACTCTGAGGATCAAGGATTTCGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATAAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAACCTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTTCCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGAAGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAAGAAAGCCCCAACGGCACCACTTATTATGAACCTCACCCTGTCACGAATGGAGTTGAGGAG    ]
[+] EMBL FR0060375            [                                                                                                                         CACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGATGNTCATGCA                                                                                                                                                                                                                                               ]
[+] EMBL FR0060822            [                                                                                                                                 ATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGNAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAACTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGGTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGGTGTGGTGCAAGTCCTTGGAGAGCTGGCCAACAATGGGCAGCCCATGAGGAAGTTCATGCA                                                                                                                                                                                                                                               ]
[+] EMBL CA332758             [                                                                                                                                               AAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAACCTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTTCCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGAAGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAA                                                                ]




>consensus_2544#0
ACCATCAGCTGTGGAGAACCTACAATAAGATTCACGATTAGAAGAAACCTTCGTCTGAAA
TGGTGCAACGACTTGGTGTTGATGCGAAAGTCGTGGAAAACTCTGAGGATCAAGGATTTC
GCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGG
GCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAG
GTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGC
TGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAATGA
ATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGTGGT
GCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAACCTT
TGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTTCCG
TTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGAAGA
AGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAAGAAAGCCCCAA
CGGCACCACTTATTATGAACCTCACCCTGTCACGAATGGAGTAGAGGAGCCCA

consensusID : consensus_2544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence 
                              [CAAACAATACATAAAAGATTATTTATGAGAGTTCAAGGCTTTCTACGTAGCTAGGCCATTCATAAGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAACTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGTAGGG]

[+] EMBL FR0059185            [CAAACAATACATAAAAGATTATTTATGAGAGTTCAAGGCTTTCTACGTAGCTAGGCCATTCATAAGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCACAGGTTTTATGGAAGGAACTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCTGGCTGAAGCAGTGTATGGGCAGGCGGTAGGG]




>consensus_2544#1
CAAACAATACATAAAAGATTATTTATGAGAGTTCAAGGCTTTCTACGTAGCTAGGCCATT
CATAAGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTT
GTAGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTT
CACAGGTTTTATGGAAGGAACTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAG
CTGGCTGAAGCAGTGTATGGGCAGGCGGTAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2544#0      ACCATCAGCTGTGGAGAACCTACAATAAGATTCACGATTAGAAGAAACCTTCGTCTGAAA 60
consensus_2544#1      --------------------------------------------------------CAAA 4
                                                                               ***

consensus_2544#0      TGGTGCAACGACTTGGTGTTGATGCGAAAGTCGTGGAAAACTCTGAGGATCAAGGATTTC 120
consensus_2544#1      CAATACA-TAAAAGATTATTTATGAGAGT-TCAAGGCTTTCTACGTAGCTAGGCCATTCA 62
                         * **   *     * ** *** **   **  **    **  *  * *     ***  

consensus_2544#0      ---GCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGT 177
consensus_2544#1      TAAGCACTTAGAATTGTTTACCAAAGAAATGGTGATGGAGAAGCCAAGTCCCCTGCTTGT 122
                         *********************************************************

consensus_2544#0      AGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCA 237
consensus_2544#1      AGGGCGGGAGTTTGTGAGGCAGTATTACACACTGTTGAACAAGGCACCAGACTTCCTTCA 182
                      ************************************************************

consensus_2544#0      CAGGTTTTATGGAAGGAATTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCT 297
consensus_2544#1      CAGGTTTTATGGAAGGAACTCCTCTTATGTCCACGGAGGTCTTGACTCAAGTGGAAAGCT 242
                      ****************** *****************************************

consensus_2544#0      GGCTGAAGCAGTGTATGGGCAGGCGGAGATCCACAAGAAGGTTATGTCCTTGCAGTTTAA 357
consensus_2544#1      GGCTGAAGCAGTGTATGGGCAGGCGGTAGGG----------------------------- 273
                      **************************                                  

consensus_2544#0      TGAATGCCACACCAAAATCAGACATGTGGATGCTCATGCCACACTCAATGATGGAGTTGT 417
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      GGTGCAAGTCCTTGGAGAGCTGTCCAACAATGGTCAGCCCATGAGGAAGTTCATGCAAAC 477
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      CTTTGTTCTTGCTCCAGAGGGTTCGGCGGCAAACAAGTTCTATGTCCATAACGACATCTT 537
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      CCGTTATGAGGATGAGGTTTTTGAAGACTCTGAAGCTGAAATTGATGAGGAATCAGAGGA 597
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      AGAAGTTGAAGAAGAACCAGAAGAGAGACAGCCATCGCCTGAGCCCCTACAAGAAAGCCC 657
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      CAACGGCACCACTTATTATGAACCTCACCCTGTCACGAATGGAGTAGAGGAGCCCA 713
consensus_2544#1      --------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)