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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 829 fasta sequence
[GCCCTTAAAGTCGATTTTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGTTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAGGAAACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAAGAAACCTGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATGAGACGGACATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGTCCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATCCACCAGTGTTGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA]
[+] EMBL CA844665 [GCCCTTAAAGTCGATTTTCAGCCCAGATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGTTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAGGACACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAAGAAACCTGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATGAGACGGACATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGTCCAGAGTGTGGATGTCGCT ]
[+] EMBL FR0057248 [ TTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGTTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGGAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCATGGTCGCTCCAGTCCAGGCCGC ]
[+] EMBL CA845273 [ GCCTGCACAAAGTGGTGGAGAACATGAA CCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAG AACAGCCCGCATCAAGCAGGAGCGTCTGTATGCCTACGCTGCCAAGAAGTCCAAGAAACCTGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGAC ]
[+] EMBL CA330539 [ TGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGTCCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATCCACCAGTGTTGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA]
consensusID : consensus_2546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 730 fasta sequence
[CCACCGCAGTGCCTTTGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAGCAATGGAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCCCAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTGGACTCTGAGGGACAATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAAGGAGCCAAACGGCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCATCAGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGGAAACGGTGGCGACGACGACCA]
[+] EMBL FR0063436 [CCACCGCAGTGCCTTTGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAGCAATGAAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCCCAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTGGACTCTGAGGGACAATATCAACATGAGGGGGCTGCAGTGCCTTGCCTCAGAGAACGGATTGGTCGATAAACACCGCTTTGATGAAACAGAAAAACGCTTTTACGAAAGGACCAA ]
[+] EMBL FR0063452 [ CAATGCTGGGCTCGGTCTAATAGCAATGGAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCCCAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTGGACTCTGAGGGACAATATCAACATGAGTGGACTGCAGGGCCTTGCCTCAGAGAACGTATGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAAGGAGCCCAACGGCCCTGCCCCACAGC ]
[+] EMBL FR0062747 [ TATCAACATGAGTGGACTGCAGTGCCTTGCCTCANANAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCC AACGGCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCATCAGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGGAAACGGTGGCGACGACGACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2546#0 GCCCTTAAAGTCGATTTTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTC 60
consensus_2546#1 ---------------------------------------------CCACCGCAGTGCCTT 15
** ** *****
consensus_2546#0 AGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGG 120
consensus_2546#1 TGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAG-------CAATGGAG 68
*** * * * * * * * ** *** * * * * * * * *
consensus_2546#0 AGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGT 180
consensus_2546#1 GGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGC 128
** * * ** * *** ** * ** ** * ** * ** **
consensus_2546#0 TTCACGAATGAAGAGCCTGGAACTGGAGAA---CCAGAGCCTGCACAAAGTGGTGGAGAA 237
consensus_2546#1 TGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTA 188
* * * **** * ** ** ** ** ** * * * *
consensus_2546#0 CATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTA- 296
consensus_2546#1 CCCACCATCAAAGCATTAGAGGCCGAAATC----GTACCTCCTCTGATACGGAGCCCAGG 244
* * * *** * * * ** ** ** * ** * * **
consensus_2546#0 --CTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACA 354
consensus_2546#1 GCCAAGAGCAGCAAAAC-ACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTG 303
* * *** ** * * ** ** ** ** * * * * *
consensus_2546#0 GGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGA 414
consensus_2546#1 GACTCTGAGGGACAATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGA--GAACGTA 361
* * * * * ** ** * * * *** * ** * * *
consensus_2546#0 TGAGGAAACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAA 474
consensus_2546#1 TGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTT---TTACGAAGGAGCCAAA 418
** * * * * * * * *** * ** * * * *** ** * **
consensus_2546#0 GAAACCTGCCCT-CATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATG 533
consensus_2546#1 CGGCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCA 478
******* ** *** * * * ** * * *** ** **
consensus_2546#0 AGACGGACATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTG- 592
consensus_2546#1 T--CAGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGA 536
* ** * * ** * * * * * * ** * * **** ** *
consensus_2546#0 -TGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTG 651
consensus_2546#1 ATGAAGAGCCTG-GAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGC 595
** * **** ****** * ** ** * * * * ** **
consensus_2546#0 TGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGA 711
consensus_2546#1 TGCACTACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGG- 654
** * * * * * ** **** *** ** *** *
consensus_2546#0 GGACTTTGTCCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATC 771
consensus_2546#1 -----CTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGG 709
***** *** * * **** * ** * * *
consensus_2546#0 CACCAGTGTTGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA 829
consensus_2546#1 AAACGGTGGCGACGACGACCA------------------------------------- 730
* * *** * * * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |