|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence
[CCCCAGCCTTAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCCAGCGTTGCCGCCGCTTCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAGTCAGGACAGAGAGCAGGGTTAAGATGAACCGCATGAGGCTGAGAATTGCC]
[+] EMBL FR0063864 [CCCCAGCCTTAATGTTATCCCATTCCCGTTGTCTCACCAGGAATTTCAGCCGGTCTCTGTCTGCCCTCCGCCA GGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAAATGA ]
[+] EMBL CA846237 [ TGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCCAGCGTTGCCGCCGCTTCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAGTCAGGACAGAGAGCAGGGTTAAGATGAACCGCATGAGGCTGAGAATTGCC]
[+] EMBL CA590494 [ TTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCA ]
consensusID : consensus_2558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 678 fasta sequence
[GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCC]
[+] EMBL CA588132 [GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATTATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCC]
[+] EMBL FR0062363 [ ATAATGTTATCCCATTCCCGGTGTCTCACCAGGTATTTCAGCCGTTCTCTGTCTGCCCTGCGCCAGTGGAATCAGGCGCTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGCTGGAGACACCGTCACTGAGGATGAGGGGGGGTGTGAAATTGAGACTGATAAGACATCAGGGCA ]
[+] EMBL BU806809 [ TAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCATAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTC ]
[+] EMBL BU806958 [ TCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGT ]
[+] EMBL FR0062389 [ TTTCAGCCG TCTCTGTCTGCCCTCCGCCA GGGAATCAGG GAGCGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGATAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGAGGGAGAAAGCTGCTGGAGACACCGTCACTGAGGATGAGGCGGTGTGCGAAATTGAGACTGATAAGAAATCAGTGCAGGTTCCGGCTCCTGCTGCTGGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2558#0 -------------------------------------CCCCAGCCTTAATGTTATCCCAT 23
consensus_2558#1 GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATAATGTTATCCCAT 60
* ***** **************
consensus_2558#0 TCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAG 83
consensus_2558#1 TCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAG 120
************************************************************
consensus_2558#0 GCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAAC 143
consensus_2558#1 GCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAAC 180
************************************************************
consensus_2558#0 ATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTT 203
consensus_2558#1 ATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTT 240
************************************************************
consensus_2558#0 GCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAG 263
consensus_2558#1 GCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAG 300
************************************************************
consensus_2558#0 GGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGT 323
consensus_2558#1 GGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGT 360
************************************************************
consensus_2558#0 GAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAA 383
consensus_2558#1 GAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAA 420
************************************************************
consensus_2558#0 GAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGA 443
consensus_2558#1 GAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGA 480
************************************************************
consensus_2558#0 AAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCA 503
consensus_2558#1 AAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCA 540
************************************************************
consensus_2558#0 GCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCA 563
consensus_2558#1 GCCCCACCACCACCTTCTGCTGCTGC---------------------------TTCTCCA 573
************************** *******
consensus_2558#0 CCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTG 623
consensus_2558#1 CCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTG 633
************************************************************
consensus_2558#0 CCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCCAGCGTTGCCGCCGCT 683
consensus_2558#1 CCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCC--------------- 678
*********************************************
consensus_2558#0 TCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAGTCAGGACAGAGAGCAGGGTTAAG 743
consensus_2558#1 ------------------------------------------------------------
consensus_2558#0 ATGAACCGCATGAGGCTGAGAATTGCC 770
consensus_2558#1 ---------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |