These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [TGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCTACAGACACTGGGGTGGTTGACAAGTGGGTCATAGACAGTGGAGCGACATCTGACTGGAACACCGGCAGCTTACCAGACAATCGTGGTATGGCCTGTTTAAGGAGCCATGGCACTGAAACAAGCCACAGGGCACGACAGGTGACCAAAGATGACTTCATGACCTTTGACTACATCCTCTGCATGGATGAAAGCAACTTGAGAGAGTTGAACAGGAAAGTGAAGTCGGTGAAGAACTGTAAAGCAAAGATTGAGCTGCTCGGTTCCTACGACCCTCAGAAGCAGCTCATCATTAAAGACCCCTATTATGGGAGCGACAATGACTTTGAGATGGTGTACCAACAGTGTGTACGATGCTGCGAGGCGTTCCTGGAAACGAACTCCTAATGTCTACCCTGAACGTAACTTTCGGAATGGGACACATATTTCTGCTGTCTGCTATAATCCGGAATACCGTTTCACGTCTCATCAGCTTTCTGT] [+] EMBL FR0055192 [TGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCTACAGACACTGGGGTGGTTGACAAGTGGGTCATAGACAGTGGAGCGACATCTGACTGGAACACCGGCAGCTTACCAGACAATCGTGGTATGGCCTGTTTAAGGAGCCATGGCACTGAAACAAGCCACAGGGCACGACAGGTGACCAAAGATGACTTCATGACCTTTGACTACATCCTCTGCATGGATGAAAGCAACTTGAGAGAGTTGAACAGGAAAGTGAAGTCGGTGAAGAACTGTAAAGCAAAGATTGAGCTGCTCGGTTCCTACGACCCTCAGAAGCAGCTCATCATTAAAGACCCCTATTATGGGAGCGACAATGACTTTGAGATGGTGTACCAACAGTGTGTACGATGCTGCGAGGCGTTCCTGGAAACGAACTCCTAATGTCTACCCTGAACGTAACTTTCGGAATGGGACACATATTTCTGCTGTCTGCTATAATCCGGAATACCGTTTCACGTCTCATCAGCTTTCTGT] consensusID : consensus_256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [GTATGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCTACAGACACTGGGGTGGTTGACAAGGTAAGTACCCCTTGTTAAACGATAAAGACTGCTTTCTGTACCTTTTTGTTAAATTTTTAACAAATAATTGTTAAAAGTTTTTGAAGACAGAAGACATGTCTCTTCCACTTGCAGTCACGCAGGCCTAACAATGTACCAAACTGACAGAATTCTGAAAATCCATATATCCGTGTGATGCCACGAGCACCCTTTTCCTCCAGTGTATAAATCTTTTGTACTATCTTATTGTTCTCCATGCTTCGCTCTGCTTAGGGGAGGATAGACAGTGCTGCCACCTCCACCTATGAGATAGGA] [+] EMBL FR0058480 [GTATGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCTACAGACACTGGGGTGGTTGACAAGGTAAGTACCCCTTGTTAAACGATAAAGACTGCTTTCTGTACCTTTTTGTTAAATTTTTAACAAATAATTGTTAAAAGTTTTTGAAGACAGAAGACATGTCTCTTCCACTTGCAGTCACGCAGGCCTAACAATGTACCAAACTGACAGAATTCTGAAAATCCATATATCCGTGTGATGCCACGAGCACCCTTTTCCTCCAGTGTATAAATCTTTTGTACTATCTTATTGTTCTCCATGCTTCGCTCTGCTTAGGGGAGGATAGACAGTGCTGCCACCTCCACCTATGAGATAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_256#0 ---TGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCT 57 consensus_256#1 GTATGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCT 60 ********************************************************* consensus_256#0 ACAGACACTGGGGTGGTTGACAAGTGGGTCATAGACAGTGGAGCGACATCTGACTGGAAC 117 consensus_256#1 ACAGACACTGGGGTGGTTGACAAGGTAAGTACCCCTTGTTAAACGATA---------AAG 111 ************************ * ** * *** * ** consensus_256#0 ACCGGCAGCTTACCAGACAATCGTGGTATGGCCTGTTTAAGGAGCCATGGCACTGAAACA 177 consensus_256#1 ACT----GCTTTCTGTACCTTTTTGTTAAA---TTTTTAACAAATAAT-----TGTTAAA 159 ** **** * ** * ** ** * ***** * ** ** * * consensus_256#0 AGCCACAGGGCACGACAGGTGACCAAAGATGACTTCATGACCTTTGACTACATCCTCTGC 237 consensus_256#1 AGTTTTTGAA---GACAGAAGAC-----ATGTCTCTTCCACTTGCAGTCACGCAGGCC-T 210 ** * ***** *** *** ** ** * ** * consensus_256#0 ATGGATGAAAGCAACTTGAGAGAGTTGAACAGGAAAGTGAAGTCGGTGAAGAACTGTAAA 297 consensus_256#1 AACAATGTAC-CAAACTGACAGAATTCTGAAAATCCAT-ATATCCGTGTGATGCCACGA- 267 * *** * *** *** *** ** * * * ** *** * * consensus_256#0 GCAAAGATTGAGCTGCTCGGTTCCTACGACCCTCAGAAGCAGCTCATCATTAAAGACCCC 357 consensus_256#1 GCACCCTTT---TCCTCCAGTGTATA-AATCTTTTGTACTATCTTATTGTTCTCCATGCT 323 *** ** * ** ** * * * * * * ** ** ** * * consensus_256#0 TATTATGGGAGCGACAATGACTTTGAGATGGTG-TACCAACAGTGTGTACGATGCTGCGA 416 consensus_256#1 TCGCTCTGCTTAGGGGAGGAT----AGACAGTGCTGCCACCTCCACCTATGA-GATAGGA 378 * * * * ** *** *** * *** * ** ** * * ** consensus_256#0 GGCGTTCCTGGAAACGAACTCCTAATGTCTACCCTGAACGTAACTTTCGGAATGGGACAC 476 consensus_256#1 ------------------------------------------------------------ consensus_256#0 ATATTTCTGCTGTCTGCTATAATCCGGAATACCGTTTCACGTCTCATCAGCTTTCTGT 534 consensus_256#1 ---------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |