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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 683 fasta sequence
[GCCAATAAAACAGCAGCGCGGCTCCGTTACATAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG-ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGGGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGCAAAAATAAGAGCCATGGTCCCCTCCTAAAGGAGCTGATGCAGACTATTAACTTCAGGGTTACAGTAGTGGAAGAATACGATGTG]
[+] EMBL CA333184 [GCCAATAAAACAGCAGCGCGGCTCCGTTACATAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTCATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGGGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGCAAAAATAAGAGCCATGGTCCCCTCCTAAAGGAG ]
[+] EMBL CA591004 [ CGGCTCCGTTACATAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCGTCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAGAACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGGGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGCAAAAATAAGAGCCATGGTCCCCTCCTAAAGGAGCTGATGC ]
[+] EMBL CA589833 [ GGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGGGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGCAAAAATAAGAGCCATGGTCCCCTCCTAAAGGAGCTGATGCAGACTATTAACTTCAGGGTTACAGTAGTGGAAGAATACGATGTG]
[+] EMBL CA589674 [ CTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCG ]
[+] EMBL CA590147 [ GAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGG ]
[+] EMBL FR0059703 [ tTTCATCATCGGCTCTGGTAACTGGGGGTCTGCCATTGCCAAAATAGTGGGAGCCAACTCTGCCCAAAATTCCAAATTTGACAAGACTGCGAAAATGTGGGTGTTTGAGTAGACGGTGAACGGTCGCAAGTCGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGGACCTTCCTGGGCACAAACTGCCAATCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGCCATTTTGGTTTTCGTGATCCCGGACCAGTT ]
[+] EMBL FR0063012 [ TCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGNATCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGGGATCCCGCA ]
consensusID : consensus_2568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[GACGCGGGACATGTGGTGTACAGAAGAGCAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAGACCTGGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGT]
[+] EMBL BU805967 [GACGCGGGACATGTGGTGTACAGAAGAGCAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAGACCTGGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2568#0 GCCAATAAAACAGCAGCGCGGCTCCGTTACATAAGCGACCAAGTCCGCGGCGGCAACGGC 60
consensus_2568#1 ---GACGCGGGACATGTGGTGTACAGAAGAGCAAGCGACCAAGTCCGCGGCGGCAACGGC 57
* * * * * * * ****************************
consensus_2568#0 TCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCA 120
consensus_2568#1 TCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCA 117
************************************************************
consensus_2568#0 TCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAA 180
consensus_2568#1 TCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAA 177
************************************************************
consensus_2568#0 ATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCA 240
consensus_2568#1 ATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCA 237
************************************************************
consensus_2568#0 AACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAAC 300
consensus_2568#1 AACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAAC 297
************************************************************
consensus_2568#0 TGCCAACCAACGTGCTAGCTGTGCCAGACCTGG-TGGAGGCGTCCAAAGACGCCGACATT 359
consensus_2568#1 TGCCAACCAACGTGCTAGCTGTGCCAGACCTGGGTGGAGGCGTCCAAAGACGCCGACATT 357
********************************* **************************
consensus_2568#0 TTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAAC 419
consensus_2568#1 TTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGT--- 414
*********************************************************
consensus_2568#0 ATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGA 479
consensus_2568#1 ------------------------------------------------------------
consensus_2568#0 CTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATG 539
consensus_2568#1 ------------------------------------------------------------
consensus_2568#0 GGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGC 599
consensus_2568#1 ------------------------------------------------------------
consensus_2568#0 AAAAATAAGAGCCATGGTCCCCTCCTAAAGGAGCTGATGCAGACTATTAACTTCAGGGTT 659
consensus_2568#1 ------------------------------------------------------------
consensus_2568#0 ACAGTAGTGGAAGAATACGATGTG 683
consensus_2568#1 ------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |